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Table 1 Five-fold cross validation performance of MHC2SK method compared to GS and SRBF methods on NielsenSet1. For each allele, we display the largest value in boldface.

From: MHC2SKpan: a novel kernel based approach for pan-specific MHC class II peptide binding prediction

   AUC PCC
allele count SRBF GS MHC2SK SRBF GS MHC2SK
DRB1*01:01 1203 0.766 0.791 0.804 0.504 0.519 0.559
DRB1*03:01 474 0.755 0.712 0.735 0.475 0.423 0.473
DRB1*04:01 457 0.728 0.761 0.754 0.428 0.490 0.481
DRB1*04:04 168 0.769 0.653 0.757 0.415 0.254 0.411
DRB1*04:05 171 0.683 0.648 0.709 0.409 0.273 0.430
DRB1*07:01 310 0.773 0.745 0.775 0.502 0.464 0.513
DRB1*08:02 174 0.766 0.783 0.782 0.452 0.461 0.485
DRB1*09:01 117 0.623 0.656 0.661 0.290 0.269 0.339
DRB1*11:01 359 0.724 0.737 0.774 0.427 0.463 0.518
DRB1*13:02 179 0.846 0.817 0.848 0.663 0.617 0.662
DRB1*15:01 365 0.798 0.786 0.801 0.582 0.566 0.586
DRB3*01:01 102 0.428 0.660 0.650 -0.082 0.147 0.015
DRB4*01:01 181 0.716 0.743 0.738 0.437 0.447 0.465
DRB5*01:01 343 0.681 0.688 0.675 0.363 0.363 0.365
average 4603 0.718 0.727 0.747 0.419 0.411 0.450