Table 1 Five-fold cross validation performance of MHC2SK method compared to GS and SRBF methods on NielsenSet1. For each allele, we display the largest value in boldface.

DRB1*01:01

1203

0.766

0.791

0.804

0.504

0.519

0.559

DRB1*03:01

474

0.755

0.712

0.735

0.475

0.423

0.473

DRB1*04:01

457

0.728

0.761

0.754

0.428

0.490

0.481

DRB1*04:04

168

0.769

0.653

0.757

0.415

0.254

0.411

DRB1*04:05

171

0.683

0.648

0.709

0.409

0.273

0.430

DRB1*07:01

310

0.773

0.745

0.775

0.502

0.464

0.513

DRB1*08:02

174

0.766

0.783

0.782

0.452

0.461

0.485

DRB1*09:01

117

0.623

0.656

0.661

0.290

0.269

0.339

DRB1*11:01

359

0.724

0.737

0.774

0.427

0.463

0.518

DRB1*13:02

179

0.846

0.817

0.848

0.663

0.617

0.662

DRB1*15:01

365

0.798

0.786

0.801

0.582

0.566

0.586

DRB3*01:01

102

0.428

0.660

0.650

-0.082

0.147

0.015

DRB4*01:01

181

0.716

0.743

0.738

0.437

0.447

0.465

DRB5*01:01

343

0.681

0.688

0.675

0.363

0.363

0.365

average

4603

0.718

0.727

0.747

0.419

0.411

0.450