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Table 1 Number of peaks found by Poisson thresholding of sliding window method.

From: Detection and classification of peaks in 5' cap RNA sequencing data

Name Summarisation Location Type
Kurtosis Directly used Peak Internal
Read Density Directly used Peak Internal
4-mers Counts Count 500 bases upstream and downstream of peak summit Internal
TFBS Maximum Peak and 100 base extension of boundaries External
DNAse I
Hypersensitivity
Maximum Peak and 100 base extension of boundaries External
H3K4me3
Hypersensitivity
Maximum Peak and 100 base extension of boundaries External
Mammalian
Conservation
Average Peak External
RNA-seq Difference Distribution function probability 100 bases flanks adjacent to peak boundaries External
  1. For each feature, the summarisation procedure, location of data points summarised, and the feature categorisation are shown.