Table 1 Number of peaks found by Poisson thresholding of sliding window method.
From: Detection and classification of peaks in 5' cap RNA sequencing data
Name | Summarisation | Location | Type |
|---|---|---|---|
Kurtosis | Directly used | Peak | Internal |
Read Density | Directly used | Peak | Internal |
4-mers Counts | Count | 500 bases upstream and downstream of peak summit | Internal |
TFBS | Maximum | Peak and 100 base extension of boundaries | External |
DNAse I Hypersensitivity | Maximum | Peak and 100 base extension of boundaries | External |
H3K4me3 Hypersensitivity | Maximum | Peak and 100 base extension of boundaries | External |
Mammalian Conservation | Average | Peak | External |
RNA-seq Difference | Distribution function probability | 100 bases flanks adjacent to peak boundaries | External |