Skip to main content

Table 3 Precision and recall of publically available classifications.

From: Detection and classification of peaks in 5' cap RNA sequencing data

  Segway   ENCODE HMM   Proposed Method  
Cell Line Precision Recall Precision Recall Precision Recall
GM12878 0.7 0.64 0.25 0.92 0.77 0.81
H1-ESC 0.59 0.71 0.27 0.89 0.61 0.81
HeLa-S3 0.79 0.66 0.32 0.91 0.76 0.87
HepG2 0.59 0.59 0.23 0.93 0.69 0.79
HUVEC 0.82 0.67 0.26 0.94 0.81 0.85
K562 0.77 0.62 0.27 0.93 0.71 0.88
  1. The reference labelling is the collection of segments that overlap a GENCODE transcript with at least 2 supporting CAGE reads within 500 bases either side of the annotated start location. An example of the proposed method's performance is presented alongside the two public methods, for a SVM cost parameter value of 0.1 and using only internal features.