Simultaneous inferences based on empirical Bayes methods and false discovery rates ineQTL data analysis

BMC Genomics

Table 1 The True FDR Performance of Controlled FDR in EB Models

True fraction of DE	Controlled FDR
	Nonparametric empirical Bayes			Parametric empirical Bayes
	0.01	0.05	0.10	0.01	0.05	0.10
0.01	0.004	0.029	0.067	0.005	0.042	0.090
0.05	0.006	0.041	0.079	0.006	0.045	0.094
0.10	0.007	0.043	0.087	0.008	0.047	0.097

ISSN: 1471-2164