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Table 2 Average performance after filtering

From: Predicting the functional repertoire of an organism from unassembled RNA–seq data

MS

TPR   

FPR  

PPV  

F1  

BLASTX

92.85

8.57

72.64

81.50

RAPSearch

96.66

17.19

57.98

72.47

PAUDA

94.68

9.38

71.41

81.34

UProC

94.97

9.34

71.34

81.47

SMS

TPR   

FPR  

PPV  

F1  

BLASTX

54.94

1.00

93.60

68.54

RAPSearch

93.75

4.26

84.35

88.80

PAUDA

87.31

2.33

90.20

88.72

UProC

94.02

4.76

82.88

88.10

  1. Performance averaged over all samples after filtering the mean–score (MS) using Gaussian mixture model and the scaled meanŰscore (SMS) by Gamma mixture model True positive rate (TPR), false positive rate (FPR), positive predictive value (PPV), and F1–Score (F1) are utilized as performance measures. All values are given in percent.