Strains | IP26 | HDIPO4 | RL3 | P25 | DS20* | LL03* | B90A | UT26S | SYK6 |
---|---|---|---|---|---|---|---|---|---|
Project ID | PRJNA208542 | PRJNA201012 | PRJNA208544 | PRJNA201016 | PRJNA201649 | PRJNA202090 | PRJNA50313 | PRJDA19949 | PRJNA73353 |
NCBI Accession No. | AUDA00000000 | ATDO00000000 | AUWY00000000 | ATHO00000000 | ATDP00000000 | ATIB00000000 | AJXQ00000000 | AP010803 to AP010806 | AP012222, AP012223 |
Source of isolation | HCH Dumpsite, India | HCH Dumpsite, India | HCH Dumpsite, India | HCH Dumpsite, India | HCH Dumpsite, India | HCH Dumpsite, Czech Republic | Rhizosphere Soil, India | Soil Contaminated with γ-HCH, Japan | Waste water of kraft mill pulp, Japan |
HCH Degarder | Yes | Yes | Yes | No | No | No | Yes | Yes | No |
Genome Size (bp) | 5,894,129 | 4,741,576 | 4,754,053 | 4,170,546 | 5,360,246 | 4,848,216 | 4,082,196 | 4,424,878 | 4,348,133 |
G + C content (%) | 64.5 | 65.5 | 65 | 64.7 | 63.6 | 64 | 65.8 | 65.6 | 66 |
Predicted CDS | 4646 (5161068 bp) | 4646 (4105641 bp) | 4636 (4152861 bp) | 4033 (3644184 bp) | 5288 (4682346 bp) | 4914 (4312911 bp) | 3976 (3570642 bp) | 4414 (3929727 bp) | 4097 (3825558 bp) |
Pseudogenes | 10 | 46 | 2 | 70 | 45 | 39 | - | - | - |
Average Gene Size (bp) | 903 | 889 | 896 | 903 | 890 | 852 | 886 | 890 | 933 |
% of CDS | 87.56% | 86.58% | 87.35% | 87.38% | 88.31% | 88.96% | 87.46% | 88.80% | 87.98% |
IS 6100 | 21 | 18 | 19 | 24 | 15 | 22 | 11 | 5 | 0 |
tRNA | 66 | 54 | 56 | 49 | 59 | 56 | 54 | 55 | 50 |
rRNA | 11 | 13 | 12 | 9 | 15 | 12 | 3 | 9 | 6 |
Genomic islands (bp) | 1104688 | 705420 | 180116 | 201158 | 179141 | 48062 | 427792 | 395714 | 244403 |