Skip to main content

Table 1 General characteristic features of the Sphingobium genomes

From: Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

Strains IP26 HDIPO4 RL3 P25 DS20* LL03* B90A UT26S SYK6
Project ID PRJNA208542 PRJNA201012 PRJNA208544 PRJNA201016 PRJNA201649 PRJNA202090 PRJNA50313 PRJDA19949 PRJNA73353
NCBI Accession No. AUDA00000000 ATDO00000000 AUWY00000000 ATHO00000000 ATDP00000000 ATIB00000000 AJXQ00000000 AP010803 to AP010806 AP012222, AP012223
Source of isolation HCH Dumpsite, India HCH Dumpsite, India HCH Dumpsite, India HCH Dumpsite, India HCH Dumpsite, India HCH Dumpsite, Czech Republic Rhizosphere Soil, India Soil Contaminated with γ-HCH, Japan Waste water of kraft mill pulp, Japan
HCH Degarder Yes Yes Yes No No No Yes Yes No
Genome Size (bp) 5,894,129 4,741,576 4,754,053 4,170,546 5,360,246 4,848,216 4,082,196 4,424,878 4,348,133
G + C content (%) 64.5 65.5 65 64.7 63.6 64 65.8 65.6 66
Predicted CDS 4646 (5161068 bp) 4646 (4105641 bp) 4636 (4152861 bp) 4033 (3644184 bp) 5288 (4682346 bp) 4914 (4312911 bp) 3976 (3570642 bp) 4414 (3929727 bp) 4097 (3825558 bp)
Pseudogenes 10 46 2 70 45 39 - - -
Average Gene Size (bp) 903 889 896 903 890 852 886 890 933
% of CDS 87.56% 86.58% 87.35% 87.38% 88.31% 88.96% 87.46% 88.80% 87.98%
IS 6100 21 18 19 24 15 22 11 5 0
tRNA 66 54 56 49 59 56 54 55 50
rRNA 11 13 12 9 15 12 3 9 6
Genomic islands (bp) 1104688 705420 180116 201158 179141 48062 427792 395714 244403
  1. *Strain having CRISPR element.