Table 2 Detail statistics of genome assembly of Sphingobium spp.
Organism (Genome status) | Assembler | K-mer length | No. of Contigs/Chromosomes & Plasmids | N50 (in Kb) |
|---|---|---|---|---|
S. baderi LL03 T (Draft) | ABySS 1.3.3 | 47 | 92 | 269 |
S. lactosutens DS20 T (Draft) | ABySS 1.3.3 | 53 | 110 | 303 |
Sphingobium sp. HDIPO4 (Draft) | ABySS 1.3.3 | 53 | 143 | 172 |
S. chinhatense IP26 T (Draft) | ABySS 1.3.3 | 61 | 236 | 142 |
S. quisquilarium P25 T (Draft) | ABySS 1.3.3 | 47 | 181 | 45 |
S. ummariense RL3 T (Draft) | ABySS 1.3.3 | 57 | 139 | 363 |
S. indicum B90A T (Draft) | ABySS 1.2.7 | 41 | 149 | 54.5 |
S. japonicum UT26S T (Draft) | PHRAP and CONSED | - | Chromosome 1 (3,514,822 bp), chromosome 2 (681,892 bp), pCHQ1 (190,974 bp), pUT1 (31,776 bp) ans pUT2 (5,398 bp) | - |
Sphingobium sp. SYK6 | PHRED/PHRAP/CONSED | - | chromosome 1 (4,199,332 bp) and pSLGP (148,801 bp) | - |