Skip to main content

Table 2 Transposable elements that associate with NuMat *

From: Genome-wide mapping of matrix attachment regions in Drosophila melanogaster

S. No. TE (size in bp) TE type TEs mapping to MARs (%) MAR size (bp) Context, location of MAR in TE
1 F-element (4708) LINE 40 207 3′-UTR, 4483-4689
2 jockey (5154) LINE 18 105 3′-UTR, 4904-5007
3 Doc (4725) LINE 67 126 3′-UTR, 4469-4595
4 opus (7521) LTR 13 291 3′-UTR, 6262-6606
5 gypsy (7469) LTR 100 127 LTR, 1-126
6 HMS-Beagle (7062) LTR 45 300 ORF, 831-1130
7 Rt1b (5171) LINE 36 250 3′-UTR, 4910-5160
  1. *Based on blast 2 sequence comparison of MAR sequence hit region with euchromatic genome sequence (> = 100 bp with > =90% similarity) carried out on Flybase Release 5.48 annotation including partial TEs.