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Table 2 Classification ability of CCA and other classification methods by Gata3 and Th datasets

From: Visualisation of the T cell differentiation programme by Canonical Correspondence Analysis of transcriptomes

Sensitivity (%)

Th cells to identify

L-SVM

NL-SVM

LDA

KNN

RF

NB

CCA

Th1

100

0

100

100

100

0

100

Th2

100

0

100

100

100

0

100

Th17

0

0

50

50

0

0

100

iTreg

50

0

50

50

0

0

100

Accuracy (%)

Th cells to identify

L-SVM

NL-SVM

LDA

KNN

RF

NB

CCA

Th1

87.5

75

87.5

100

100

75

87.5

Th2

100

75

100

100

100

75

100

Th17

75

75

62.5

87.5

62.5

75

75

iTreg

75

75

87.5

87.5

75

75

75

  1. Training and test data were the Th dataset and the Gata3 dataset, respectively. The number of feature used was 100.