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Table 1 Source, details and general results of sequence libraries

From: Whole genome sequencing and methylome analysis of the wild guinea pig

No Library Animal ID Tissue Read length Fragment size [bp] No. of clean reads Average coverage
1 MP C. aperea_2 Muscle 100 bp 2200 123,511,268*   4x
2 MP C. aperea_3 Liver 100 bp 2200
3 MBD2-PE C. aperea_1 Testis 100 bp 264-1253 195,674,422   7.3x
4 MBD2-PE C. aperea_2 Testis 100 bp 249-1326 172,854,726
5 MBD2-PE C. aperea_4 Liver 100 bp 203-672 146,575,288
6 MBD2-PE C. aperea_5 Liver 100 bp 214-743 144,660,328
7 MeDIP-PE C. aperea_1 Testis 100 bp 218-817 87,769,840   0.82x
8 MeDIP-PE C. aperea_2 Testis 100 bp 219-990 71,262,748
9 MEBS-PE_1 C. aperea_1 Testis 90 bp 235 119,880,204   1.02x**
10 MEBS-PE_2 C. aperea_2 Testis 90 bp 238 109,353,416   0.66x**
  1. MP = Illumina mate pair library; PE = Illumina paired end library; *MP libraries were pooled before sequencing; Average coverage = No. of mapped reads × read length/C. porcellus genome size. **Average coverage = No. of mapped reads × read length/C. aperea genome size.