Whole genome sequencing and methylome analysis of the wild guinea pig

BMC Genomics

Table 1 Source, details and general results of sequence libraries

No	Library	Animal ID	Tissue	Read length	Fragment size [bp]	No. of clean reads	Average coverage
1	MP	C. aperea_2	Muscle	100 bp	2200	123,511,268*	4x
2	MP	C. aperea_3	Liver	100 bp	2200	123,511,268*	4x
3	MBD2-PE	C. aperea_1	Testis	100 bp	264-1253	195,674,422	7.3x
4	MBD2-PE	C. aperea_2	Testis	100 bp	249-1326	172,854,726
5	MBD2-PE	C. aperea_4	Liver	100 bp	203-672	146,575,288
6	MBD2-PE	C. aperea_5	Liver	100 bp	214-743	144,660,328
7	MeDIP-PE	C. aperea_1	Testis	100 bp	218-817	87,769,840	0.82x
8	MeDIP-PE	C. aperea_2	Testis	100 bp	219-990	71,262,748	0.82x
9	MEBS-PE_1	C. aperea_1	Testis	90 bp	235	119,880,204	1.02x**
10	MEBS-PE_2	C. aperea_2	Testis	90 bp	238	109,353,416	0.66x**

MP = Illumina mate pair library; PE = Illumina paired end library; *MP libraries were pooled before sequencing; Average coverage = No. of mapped reads × read length/C. porcellus genome size. **Average coverage = No. of mapped reads × read length/C. aperea genome size.

ISSN: 1471-2164