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Table 3 tRNA genes identified in 19 anopheline species

From: Non-coding RNA gene families in the genomes of anopheline mosquitoes

 

- > Aliphatic

- > S-containing

P

Σ

M

F

Anopheline species

Gly

%

Val

%

Ala

%

Leu

%

Ile

%

Cys

%

Met

%

    

Albimanus

17

5.6

15

4.9

28

9.2

20

6.5

13

4.2

5

1.6

15

4.9

0

306

170.5

1.8

Arabiensis

22

6.1

28

7.8

25

7.0

22

6.1

16

4.5

5

1.4

18

5.0

6

359

246.6

1.5

Atroparvus

21

6.2

26

7.7

24

7.1

23

6.8

12

3.6

5

1.5

17

5.0

1

337

224.3

1.5

Christyi

18

6.0

20

6.7

20

6.7

17

5.7

11

3.7

5

1.7

14

4.7

8

300

172.7

1.7

Coluzzii

24

6.3

22

5.8

27

7.1

22

5.8

16

4.2

5

1.3

18

4.7

10

379

224.5

1.7

Culicifacies

21

7.3

23

8.0

18

6.3

19

6.6

10

3.5

6

2.1

13

4.5

118

286

203.0

1.4

Darlingi

10

4.4

12

5.3

16

7.0

14

6.1

9

3.9

3

1.3

11

4.8

0

228

134.7

1.7

Dirus

23

6.7

23

6.7

26

7.5

23

6.7

12

3.5

5

1.4

16

4.6

3

345

216.3

1.6

Epiroticus

18

5.6

22

6.9

24

7.5

19

5.9

13

4.1

5

1.6

16

5.0

67

320

223.5

1.4

Farauti

22

6.2

25

7.1

22

6.2

23

6.5

14

4.0

5

1.4

17

4.8

0

354

181.0

1.9

Funestus

17

5.9

24

8.4

18

6.3

15

5.2

10

3.5

6

2.1

12

4.2

0

286

225.2

1.3

Maculatus

6

4.8

10

7.9

8

6.3

9

7.1

3

2.4

4

3.2

6

4.8

5

126

141.9

0.9

Melas

20

5.7

23

6.6

26

7.4

24

6.9

16

4.6

5

1.4

17

4.9

15

349

227.4

1.5

Merus

22

6.3

25

7.1

25

7.1

22

6.3

14

4.0

5

1.4

18

5.1

8

351

251.8

1.4

Minimus

18

5.8

42

13.5

18

5.8

23

7.4

11

3.5

5

1.6

18

5.8

134

312

201.8

1.5

Gambiae AgamP4

29

6.2

65

14.0

28

6.0

28

6.0

15

3.2

5

1.1

21

4.5

11

465

278.0

1.7

Gambiae AgamP4*

25

5.7

64

14.5

28

6.4

26

5.9

15

3.4

5

1.1

19

4.3

1

440

278.0

1.6

Gambiae AgamS

27

6.9

26

6.7

29

7.5

28

7.2

14

3.6

5

1.3

21

5.4

13

389

236.4

1.6

Quadrianulatus

22

6.2

25

7.0

25

7.0

22

6.2

14

3.9

4

1.1

17

4.8

7

357

283.8

1.3

Sinensis

20

5.6

26

7.2

23

6.4

26

7.2

14

3.9

6

1.7

18

5.0

2

360

241.4

1.5

Stephensi

18

5.6

27

8.3

19

5.9

17

5.2

12

3.7

5

1.5

16

4.9

83

324

225.4

1.4

Average aa per species

20.0

6.0

27.3

8.0

22.7

6.8

21.0

6.4

12.6

3.8

5.0

1.6

16.1

4.8

23.4

331.4

218.5

1.5

 

- > Acidic & their amide cont. aa

- > Basic

    

Anopheline species

Asp

%

Asn

%

Glu

%

Gln

%

His

%

Arg

%

Lys

%

    

Albimanus

14

4.6

10

3.3

23

3.3

12

3.9

15

4.9

19

6.2

22

7.2

    

Arabiensis

18

5.0

11

3.1

25

3.1

15

4.2

20

5.6

21

5.8

24

6.7

    

Atroparvus

18

5.3

10

3.0

22

3.0

13

3.9

12

3.6

21

6.2

23

6.8

    

Christyi

16

5.3

12

4.0

26

4.0

13

4.3

16

5.3

20

6.7

22

7.3

    

Coluzzii

18

4.7

11

2.9

25

2.9

16

4.2

20

5.3

24

6.3

31

8.2

    

Culicifacies

12

4.2

8

2.8

22

2.8

13

4.5

11

3.8

18

6.3

18

6.3

    

Darlingi

12

5.3

5

2.2

16

2.2

8

3.5

16

7.0

14

6.1

17

7.5

    

Dirus

16

4.6

10

2.9

26

2.9

15

4.3

13

3.8

24

7.0

24

7.0

    

Epiroticus

16

5.0

9

2.8

23

2.8

14

4.4

15

4.7

20

6.3

23

7.2

    

Farauti

18

5.1

11

3.1

27

3.1

15

4.2

12

3.4

21

5.9

25

7.1

    

Funestus

13

4.5

7

2.4

22

2.4

13

4.5

13

4.5

19

6.6

19

6.6

    

Maculatus

5

4.0

3

2.4

6

2.4

5

4.0

8

6.3

13

10.3

8

6.3

    

Melas

18

5.2

13

3.7

22

3.7

14

4.0

14

4.0

23

6.6

25

7.2

    

Merus

19

5.4

11

3.1

24

3.1

15

4.3

16

4.6

21

6.0

25

7.1

    

Minimus

13

4.2

8

2.6

19

2.6

13

4.2

12

3.8

18

5.8

18

5.8

    

Gambiae AgamP4

26

5.6

14

3.0

28

3.0

15

3.2

23

4.9

24

5.2

29

6.2

    

Gambiae AgamP4*

26

5.9

12

2.7

27

2.7

15

3.4

23

5.2

23

5.2

25

5.7

    

Gambiae AgamS

18

4.6

11

2.8

26

2.8

16

4.1

17

4.4

22

5.7

25

6.4

    

Quadrianulatus

18

5.0

11

3.1

25

3.1

15

4.2

19

5.3

21

5.9

26

7.3

    

Sinensis

22

6.1

9

2.5

29

2.5

13

3.6

19

5.3

22

6.1

27

7.5

    

Stephensi

14

4.3

9

2.8

31

2.8

15

4.6

14

4.3

19

5.9

18

5.6

    

Average aa per species

16.7

5.0

9.8

2.9

23.5

2.9

13.5

4.1

15.6

4.8

20.3

6.3

22.6

6.8

    
 

- > Aromatic

- > OH-containing

- > Cyclic

- > Seleno.-cont.

    

Anopheline species

Phe

%

Tyr

%

Trp

%

Ser

%

Thr

%

Pro

%

Sec

%

    

Albimanus

9

2.9

14

4.6

6

2.0

19

6.2

15

4.9

14

4.6

1

0.3

    

Arabiensis

9

2.5

21

5.8

6

1.7

20

5.6

15

4.2

18

5.0

0

     

Atroparvus

9

2.7

17

5.0

6

1.8

18

5.3

16

4.7

23

6.8

1

0.3

    

Christyi

9

3.0

9

3.0

5

1.7

17

5.7

15

5.0

15

5.0

0

     

Coluzzii

9

2.4

24

6.3

6

1.6

21

5.5

15

4.0

25

6.6

0

     

Culicifacies

9

3.1

11

3.8

5

1.7

18

6.3

16

5.6

13

4.5

2

0.7

    

Darlingi

8

3.5

16

7.0

6

2.6

12

5.3

9

3.9

13

5.7

1

0.4

    

Dirus

11

3.2

18

5.2

6

1.7

19

5.5

16

4.6

18

5.2

1

0.3

    

Epiroticus

9

2.8

19

5.9

5

1.6

18

5.6

15

4.7

17

5.3

0

     

Farauti

11

3.1

21

5.9

6

1.7

21

5.9

17

4.8

18

5.1

3

0.8

    

Funestus

9

3.1

17

5.9

5

1.7

17

5.9

15

5.2

15

5.2

0

     

Maculatus

2

1.6

6

4.8

2

1.6

8

6.3

10

7.9

3

2.4

1

0.8

    

Melas

9

2.6

20

5.7

6

1.7

20

5.7

17

4.9

17

4.9

0

     

Merus

9

2.6

22

6.3

6

1.7

19

5.4

15

4.3

18

5.1

      

Minimus

9

2.9

14

4.5

5

1.6

16

5.1

15

4.8

17

5.4

0

     

Gambiae AgamP4

13

2.8

23

4.9

8

1.7

23

4.9

15

3.2

32

6.9

1

0.2

    

Gambiae AgamP4*

9

2.0

22

5.0

7

1.6

22

5.0

15

3.4

32

7.3

0

     

Gambiae AgamS

9

2.3

25

6.4

7

1.8

21

5.4

15

3.9

27

6.9

0

     

Quadrianulatus

9

2.5

24

6.7

6

1.7

19

5.3

16

4.5

19

5.3

0

     

Sinensis

9

2.5

21

5.8

6

1.7

18

5.0

15

4.2

17

4.7

0

     

Stephensi

10

3.1

17

5.2

5

1.5

19

5.9

14

4.3

23

7.1

2

0.6

    

Average aa per species

9.0

2.7

18.1

5.4

5.7

1.7

18.3

5.6

14.8

4.6

18.8

5.5

0.7

0.5

    
  1. The columns under the amino acid name show the number of tRNA isoacceptor genes determined for each amino acid indicated, while neighboring columns show the respective percentage of the total number of tRNA genes for that isoacceptor in that particular species. Cells with characters in bold/italic font show numbers that differ significantly for that particular tRNA from the other species. The taxon indicated as gambiae AgamP4* refers to the numbers obtained by Behura and Severson (Behura and Severson 2011; see Results). The four additional columns at the right-hand side of the first part of the table show additional data such as (from left to right) the number of pseudogenes detected (PG), the total number of tRNA genes in the species (Σ), the genome size based on the assemblies (Mb) and the number of tRNA genes per Mb of genomic sequence (F).
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