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Table 1 Summary of the predictions of CREs and CRMs in the D. melanogaster genome at the major steps of the algorithm

From: De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Steps

Motifs

CPs

CPCs

CRMC

CRM

Known CRMs

Number

Percentage

Number

Percentage

Number

Percentage

Number

Percentage

Motif findings

17890

NA

1,308,592

N/A

N/A

N/A

N/A

N/A

1,061

79.77%

CP finding

1589

8.88%

4,891

0.37%

N/A

N/A

N/A

N/A

1,041

98.11%

CPC finding

1376

86.60%

2,842

58.11%

951

N/A

N/A

N/A

1,036

99.52%

CRMC finding

1316

95.64%

2,807

98.77%

937

98.53%

815

N/A

1,036

100.00%

CRM finding

N/A

N/A

N/A

N/A

N/A

N/A

746

115,932

947

91.41%

Overall percentage

 

7.36%

 

0.21%

 

98.53%

   

77.89%

  1. Each percentage is calculated based on the immediate previous step, except for the overall percentages which are based on the relevant initial step.
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BMC Genomics

ISSN: 1471-2164

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