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Table 1 Summary of the predictions of CREs and CRMs in the D. melanogaster genome at the major steps of the algorithm

From: De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets

Steps Motifs CPs CPCs CRMC CRM Known CRMs
Number Percentage Number Percentage Number Percentage Number Percentage
Motif findings 17890 NA 1,308,592 N/A N/A N/A N/A N/A 1,061 79.77%
CP finding 1589 8.88% 4,891 0.37% N/A N/A N/A N/A 1,041 98.11%
CPC finding 1376 86.60% 2,842 58.11% 951 N/A N/A N/A 1,036 99.52%
CRMC finding 1316 95.64% 2,807 98.77% 937 98.53% 815 N/A 1,036 100.00%
CRM finding N/A N/A N/A N/A N/A N/A 746 115,932 947 91.41%
Overall percentage   7.36%   0.21%   98.53%     77.89%
  1. Each percentage is calculated based on the immediate previous step, except for the overall percentages which are based on the relevant initial step.
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BMC Genomics

ISSN: 1471-2164

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