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Table 2 Differentially expressed genes (DEGs) involved in phytohormone metabolism and signaling pathway in the comparison between CK and Y (CK-VS-Y)

From: Gene expression profiles responses to aphid feeding in chrysanthemum (Chrysanthemum morifolium)

GeneID CK-RPKM Y-RPKM log2Ratio (Y/CK) Up-Down-Regulation (Y/CK) P-value FDR Gene description
Unigene107_All 6.80 21.82 1.68 up 6.52E-15 4.23E-13 NPR1-1 protein
Unigene23699_All 23.61 65.91 1.48 up 1.10E-21 1.08E-19 NIM1-like protein 1
Unigene16290_All 28.91 58.50 1.02 up 2.30E-05 0.000575 NIM1-like protein 1
Unigene2058_All 4.07 13.85 1.77 up 4.50E-07 1.47E-05 TGA transcription factor
Unigene3706_All 51.60 135.05 1.39 up 3.28E-68 1.09E-65 TGA transcription factor
Unigene11738_All 5.11 21.60 2.08 up 2.73E-09 1.15E-07 Phospholipase A1
Unigene37023_All 27.84 114.64 2.04 up 5.60E-20 5.05E-18 Phospholipase A1
Unigene45678_All 37.39 154.04 2.04 up 1.38E-107 7.9E-105 Lipoxygenase
Unigene11030_All 62.93 152.57 1.28 up 9.16E-44 1.83E-41 Allene oxide cyclase
Unigene29173_All 85.71 199.13 1.22 up 6.06E-72 2.09E-69 12-oxophytodienoic acid reductase
Unigene11800_All 9.14 133.63 3.87 up 2.29E-105 1.25E-102 Jasmonate ZIM domain-containing protein
Unigene19974_All 25.67 112.38 2.13 up 9.06E-53 2.20E-50 Jasmonate ZIM domain-containing protein
Unigene28971_All 32.55 103.54 1.67 up 2.66E-35 4.12E-33 Jasmonate ZIM domain-containing protein
Unigene14746_All 10.23 30.30 1.57 up 8.59E-10 3.78E-08 MYC2 transcription factor
Unigene19948_All 25.16 67.21 1.42 up 2.18E-25 2.48E-23 MYC2 transcription factor
Unigene17336_All 23.29 56.14 1.27 up 4.61E-23 4.76E-21 MYC2 transcription factor
Unigene28993_All 38.28 88.92 1.22 up 2.33E-18 1.89E-16 MYC2 transcription factor
Unigene3689_All 60.21 26.95 −1.16 down 2.97E-26 3.47E-24 MYC2 transcription factor
Unigene10068_All 55.68 122.23 1.13 up 8.46E-10 3.73E-08 1-aminocyclopropane-1-carboxylate synthase
Unigene38824_All 58.78 121.12 1.04 up 1.10E-08 4.32E-07 1-aminocyclopropane-1-carboxylate synthase
Unigene1735_All 99.27 203.73 1.04 up 8.39E-15 5.38E-13 1-aminocyclopropane-1-carboxylate synthase
Unigene23619_All 12.85 57.09 2.15 up 2.21E-26 2.59E-24 DELLA protein
Unigene21755_All 9.62 43.11 2.16 up 9.28E-12 4.81E-10 DELLA protein
Unigene29632_All 99.04 300.15 1.60 up 6.89E-90 3.08E-87 DELLA protein
Unigene41060_All 39.09 110.66 1.50 up 6.35E-12 3.35E-10 DELLA protein
Unigene21602_All 24.78 54.70 1.14 up 1.41E-28 1.81E-26 DELLA protein
  1. The criteria used for assigning significance were: P-value < 0.05, FDR ≤ 0.001, and absolute |log2Ratio(Y/CK)| ≥ 1. CK: control; Y: aphid infestation treatment.