Table 1 Genes over- and under-expressed under oxygen conditions (condition O2) for the strain MG1363
NomSpot | COG number | COG functional categories | Gene name | Gene product | 1 h | 5 h | 8 h |
|---|---|---|---|---|---|---|---|
llmg_1464 | COG3527 | Q | aldC | alpha-acetolactate decarboxylase | 4.59 | ||
llmg_1309 | COG0028 | EH | als | acetolactate synthase large subunit | 3.64 | ||
llmg_1700 | COG4608 | E | choQ | choline ABC transporter ATP binding protein | 3.21 | ||
llmg_1699 | COG1732 | M | choS | choline ABC transporter permease and substrate binding protein | 3.61 | ||
llmg_1737 | COG0596 | R | cpo | non-heme chloride peroxidase | 2.27 | ||
llmg_0346 | COG1118 | P | fhuC | ferrichrome ABC transporter fhuC | 4.28 | ||
llmg_0349 | COG0614 | P | fhuD | ferrichrome ABC transporter substrate binding protein | 5.67 | ||
llmg_0348 | COG0609 | P | fhuG | ferrichrome ABC transporter permease protein | 4.15 | ||
llmg_1702 | COG1249 | C | gshR | glutathione reductase | 3.00 | ||
llmg_0274 | llmg_0274 | conserved hypothetical protein | 4.67 | ||||
llmg_0276 | COG0656 | R | llmg_0276 | oxidoreductase, aldo/keto reductase family | 3.52 | ||
llmg_0281 | COG1328 | F | llmg_0281 | anaerobic ribonucleoside-triphosphate reductase | 6.11 | ||
llmg_2143 | COG1302 | S | llmg_2143 | putative 20-kDa protein | 3.24 | ||
llmg_2144 | llmg_2144 | hypothetical protein predicted by Glimmer/Critica | 5.30 | ||||
llmg_2145 | llmg_2145 | conserved hypothetical protein | 5.27 | ||||
llmg_0075 | COG0095 | H | lplL | lipoate-protein ligase | 8.38 | ||
llmg_1828 | COG1169 | HQ | menF | menaquinone-specific isochorismate synthase | 2.69 | ||
llmg_0951 | COG0225 | O | msrA | peptide methionine sulfoxide reductase | 2.52 | ||
llmg_1970 | COG0822 | C | nifU | conserved hypothetical protein | 4.33 | ||
llmg_0408 | COG0446 | R | noxE | NADH oxidase | 22.93 | ||
llmg_1543 | COG0209 | F | nrdE | ribonucleoside-diphosphate reductase alpha chain | 16.70 | ||
llmg_1544 | COG0208 | F | nrdF | ribonucleoside-diphosphate reductase beta chain | 5.63 | ||
llmg_0282 | COG0602 | O | nrdG | anaerobic ribonucleoside-triphosphate reductase activating protein | 4.30 | ||
llmg_1541 | COG0695 | O | nrdH | Glutaredoxin-like protein nrdH. | 10.25 | ||
llmg_1542 | COG0716 | C | nrdI | Ribonucleotide reductase NrdI | 12.93 | ||
llmg_0074 | COG1071 | C | pdhA | pyruvate dehydrogenase E1 component alpha subunit | 5.96 | ||
llmg_0073 | COG0022 | C | pdhB | pyruvate dehydrogenase E1 component beta subunit | 5.03 | ||
llmg_0072 | COG0508 | C | pdhC | pyruvate dehydrogenase complex E2 component | 5.65 | ||
llmg_0071 | COG1249 | C | pdhD | pyruvate dehydrogenase complex E3 component | 2.84 | ||
llmg_0629 | COG1882 | C | pfl | formate acetyltransferase | 2.97 | ||
llmg_0318 | COG2077 | O | tpx | thiol peroxidase | 4.18 | ||
llmg_0776 | COG0492 | O | trxB2 | thioredoxin reductase | 4.28 | ||
NomSpot | COG number | COG functional categories | Gene name | Gene product | 1 h | 5 h | 8 h |
llmg_2432 | COG1012 | C | adhE | alcohol-acetaldehyde dehydrogenase | −7.45 | ||
llmg_0100 | COG2217 | P | cadA | cation-transporting ATPase | −4.06 | ||
llmg_1865 | COG3104 | E | dtpT | di-/tripeptide transporter | −2.11 | ||
llmg_0758 | COG0038 | P | eriC | Putative chloride channel protein. | −2.04 | ||
llmg_1551 | COG2116 | P | fdhC | putative formate dehydrogenase | −2.76 | ||
llmg_1441 | COG1053 | C | frdC | fumarate reductase flavoprotein subunit | −4.24 | ||
llmg_0993 | COG0634 | F | hprT | hypoxanthine-guanine phosphoribosyltransferase | −2.01 | ||
llmg_1915 | COG0247 | C | llmg_1915 | putative Fe-S oxidoreductase | −3.61 | ||
llmg_0447 | COG0674 | C | nifJ | Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit | −11.19 | ||
llmg_1514 | COG2344 | R | rex | Redox-sensing transcriptional repressor rex. | −2.73 | ||
llmg_0640 | COG1393 | P | trmA | Regulatory protein spx | −2.15 | ||
llmg_0429 | COG0605 | P | sodA | superoxide dismutase | −3.08 | ||
llmg_1362 | orf44 | hypothetical protein predicted by Glimmer/Critica | −2.28 | ||||
llmg_1376 | COG4227 | L | ltrC | LtrC | −2.61 | ||
llmg_1377 | orf30 | hypothetical protein predicted by Glimmer/Critica | −2.09 | ||||
llmg_1378 | orf29 | hypothetical protein predicted by Glimmer/Critica | −2.10 | ||||
llmg_1379 | COG2856 | E | orf28 | Predicted Zn peptidase | −2.06 | ||
llmg_1384 | orf24 | hypothetical protein predicted by Glimmer/Critica | −2.11 | ||||
llmg_1387 | COG5179 | K | orf21 | hypothetical protein predicted by Glimmer/Critica | −2.12 | ||
llmg_1399 | orf10 | hypothetical protein predicted by Glimmer/Critica | −2.37 | ||||
llmg_1402 | orf8 | hypothetical protein predicted by Glimmer/Critica | −2.03 |