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Table 3 Nucleotide diversity per gene

From: Characterization of the porcine nutrient and taste receptor gene repertoire in domestic and wild populations across the globe

Gene group

Genes

πt ± SE

πint ± SE

πg ± SE

πe ± SE

πi ± SE

πutr ± SE

Ï€s

πa/ πs

FSTa

Bitter

Tas2r20

2.0 ± 0.6

2.1 ± 0.5

2.7 ± 1.2

2.7 ± 1.2

-

-

5.5

0.3359

0.28*

 

Tas2r9

2.3 ± 0.7

2.4 ± 0.7

1.0 ± 0.6

1.0 ± 0.6

-

-

0.0

NA†

0.41*

 

Tas2r10

1.9 ± 0.6

2.0 ± 0.6

0.8 ± 0.6

0.8 ± 0.6

-

-

1.0

0.6879

0.38*

 

Tas2r42

2.0 ± 0.6

1.9 ± 0.9

4.7 ± 1.6

4.7 ± 1.6

-

-

10.0

0.3098

0.29*

 

Tas2r16

3.1 ± 0.8

3.2 ± 0.5

2.2 ± 0.9

2.2 ± 0.9

-

-

4.9

0.2745

0.04

 

Tas2r38

0.7 ± 0.2

0.5 ± 0.2

3.6 ± 1.3

3.6 ± 1.3

-

-

8.6

0.2371

0.29*

 

Tas2r39

3.0 ± 0.2

3.0 ± 0.1

4.2 ± 1.5

4.2 ± 1.5

-

-

5.7

0.6438

0.12

 

Tas2r41

0.5 ± 0.2

0.5 ± 0.2

2.3 ± 1.0

2.3 ± 1.0

-

-

3.3

0.6041

0.29*

 

Tas2r60

0.8 ± 0.2

0.7 ± 0.2

2.4 ± 0.9

1.6 ± 1.0

4.3 ± 1.6

-

4.8

0.0940

0.38*

 

Tas2r7

2.9 ± 0.2

3.0 ± 0.2

1.8 ± 0.8

1.8 ± 0.8

-

-

2.8

0.5311

0.15*

Amino acids

mGluR4

3.6 ± 0.5

3.2 ± 0.3

3.7 ± 0.4

2.1 ± 0.6

3.7 ± 0.4

0.8 ± 0.7

7.7

0.0188

0.28*

 

GPRC6A

1.0 ± 0.8

1.1 ± 0.8

0.5 ± 0.2

0.5 ± 0.3

0.6 ± 0.3

-

0.8

0.6738

0.29*

 

mGluR1

2.1 ± 0.3

1.5 ± 0.2

2.1 ± 0.4

0.8 ± 0.4

2.1 ± 0.7

3.0 ± 1.8

3.5

0.0007

0.18*

 

Tas1R1

0.8 ± 0.3

0.5 ± 0.8

0.9 ± 0.3

0.4 ± 0.3

1.0 ± 0.3

-

0.8

0.3351

0.36*

Fatty acids

GPR40

1.9 ± 0.3

1.9 ± 0.4

1.6 ± 0.8

1.6 ± 0.8

-

-

3.6

0.1940

0.23*

 

GPR43

1.9 ± 0.6

2.0 ± 0.5

1.5 ± 0.8

1.5 ± 0.8

-

-

5.1

0.0378

0.09

 

GPR41

2.9 ± 0.6

3.1 ± 0.5

1.1 ± 0.7

1.1 ± 0.7

-

-

3.4

0.0986

0.26*

 

GPR120

1.9 ± 0.9

1.4 ± 0.6

2.2 ± 0.5

0.3 ± 0.2

2.3 ± 0.7

-

1.3

0.0000

0.15

 

GPR84

0.5 ± 0.5

0.6 ± 0.5

0.1 ± 0.1

0.1 ± 0.1

-

-

0.1

0.3891

0.26*

Average

 

1.9 ± 0.6

1.8 ± 0.6

2.1 ± 0.9

1.7 ± 0.9

2.3 ± 0.7

1.9 ± 1.2

3.8

  
  1. The nucleotide diversity per kilobase is shown by genomic region (Ï€), synonymous (Ï€s) and non-synonymous diversity (Ï€a) and fixation index (FST) for each taste receptor gene analyzed in the global pig population excluding the two Sumatran wild boars (n =77).
  2. SE = standard error, a = FST computed using total region (intergenic and gene), Nucleotide diversity for total (πt), intergenic (πint), gene (πg, included: CDS, intron and UTRs), exonic (πe), intronic (πi) and in UTR region (πutr). †Gene without synonymous mutations. *P < 0.05, Significance based on 1000 permutations.