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Table 1 Expression levels of full-length toxin clusters for Boiga irregularis based on 10 million reads mapped to coding sequences

From: RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes

Rank Cluster name Cluster size CDS length Median coverage % Toxin reads % Total reads
1 SVMPIII-2a 2 1,836 32,071 15.106 5.464
2 3FTx-9a 7 318 116,501 12.923 4.674
3 3FTx-4a 4 318 101,232 11.848 4.286
4 3FTx-3a 11 336 96,068 9.737 3.522
5 3FTx-2a 7 330 69,343 7.058 2.553
6 3FTx-10a 9 318 68,918 6.897 2.495
7 3FTx-8a 6 330 63,436 6.398 2.314
8 3FTx-1a 6 330 60,327 6.242 2.258
9 3FTx-7a 4 330 46,069 4.852 1.755
10 CRISP-1a 4 720 19,816 3.835 1.387
11 SVMPIII-3a 4 1,872 8,563 3.647 1.319
12 SVMPIII-4a 2 1,842 8,043 3.471 1.256
13 SVMPIII-1 1 1,842 6,274 2.630 0.951
14 NP-1a 2 534 9,116 1.400 0.507
15 3FTx-6a 3 255 14,984 0.948 0.343
16 3FTx-5 1 255 8,863 0.572 0.207
17 CTL-8a 2 495 4,283 0.497 0.180
18 CTL-9a 2 483 2,536 0.289 0.105
19 CTL-5 1 498 2,088 0.243 0.088
20 CTL-6 1 591 1,891 0.219 0.079
21 Ficolin-1a 2 996 953 0.196 0.071
22 Ficolin-3 1 996 667 0.146 0.053
23 CTL-3 1 501 1,076 0.123 0.044
24 KUN-1 1 765 623 0.100 0.036
25 AChE-1 1 1,818 268 0.100 0.036
26 CTL-7 1 483 808 0.090 0.033
27 Ficolin-2 1 999 403 0.083 0.030
28 AChE-2a 2 1,650 186 0.063 0.023
29 PLA 2-1a 2 456 408 0.042 0.015
30 CFVII 1 1,278 117 0.032 0.012
31 AChE-3 1 1,689 54 0.027 0.010
32 VEGF-A 1 579 190 0.025 0.009
33 Ficolin-4 1 1,026 108 0.024 0.009
34 VF 1 4,965 22 0.022 0.008
35 Ficolin-5 1 999 93 0.019 0.007
36 CTL-2 1 531 163 0.019 0.007
37 Waprin-2 1 408 177 0.016 0.006
38 VEGF-1 1 447 153 0.015 0.006
39 CTL-1 1 639 65 0.010 0.003
40 KUN-2 1 1,542 24 0.008 0.003
41 CTL-4 1 507 59 0.007 0.003
42 HYAL 1 1,344 20 0.006 0.002
43 PDE4 1 1,362 18 0.005 0.002
44 CFX 1 1,452 16 0.005 0.002
45 Waprin-1 1 219 82 0.004 0.002
46 VEGF-3 1 627 12 0.002 0.001
  1. Abbreviations: 3FTx–three-finger toxin, AChE–acetylcholinesterase, CDS–coding sequence, CF–coagulation factor, CTL–C-type lectin, CRISP–cysteine-rich secretory protein, HYAL–hyaluronidase, KUN-Kunitz-type protease inhibitor, NP–natriuretic peptide, PDE–phosphodiesterase, PLA 2–Type II Phospholipase A, SVMPIII–snake venom metalloproteinase (P-III), VEGF–vascular endothelial growth factor, VF–venom factor.
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BMC Genomics

ISSN: 1471-2164

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