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Table 1 Expression levels of full-length toxin clusters for Boiga irregularis based on 10 million reads mapped to coding sequences

From: RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes

Rank

Cluster name

Cluster size

CDS length

Median coverage

% Toxin reads

% Total reads

1

SVMPIII-2a

2

1,836

32,071

15.106

5.464

2

3FTx-9a

7

318

116,501

12.923

4.674

3

3FTx-4a

4

318

101,232

11.848

4.286

4

3FTx-3a

11

336

96,068

9.737

3.522

5

3FTx-2a

7

330

69,343

7.058

2.553

6

3FTx-10a

9

318

68,918

6.897

2.495

7

3FTx-8a

6

330

63,436

6.398

2.314

8

3FTx-1a

6

330

60,327

6.242

2.258

9

3FTx-7a

4

330

46,069

4.852

1.755

10

CRISP-1a

4

720

19,816

3.835

1.387

11

SVMPIII-3a

4

1,872

8,563

3.647

1.319

12

SVMPIII-4a

2

1,842

8,043

3.471

1.256

13

SVMPIII-1

1

1,842

6,274

2.630

0.951

14

NP-1a

2

534

9,116

1.400

0.507

15

3FTx-6a

3

255

14,984

0.948

0.343

16

3FTx-5

1

255

8,863

0.572

0.207

17

CTL-8a

2

495

4,283

0.497

0.180

18

CTL-9a

2

483

2,536

0.289

0.105

19

CTL-5

1

498

2,088

0.243

0.088

20

CTL-6

1

591

1,891

0.219

0.079

21

Ficolin-1a

2

996

953

0.196

0.071

22

Ficolin-3

1

996

667

0.146

0.053

23

CTL-3

1

501

1,076

0.123

0.044

24

KUN-1

1

765

623

0.100

0.036

25

AChE-1

1

1,818

268

0.100

0.036

26

CTL-7

1

483

808

0.090

0.033

27

Ficolin-2

1

999

403

0.083

0.030

28

AChE-2a

2

1,650

186

0.063

0.023

29

PLA 2-1a

2

456

408

0.042

0.015

30

CFVII

1

1,278

117

0.032

0.012

31

AChE-3

1

1,689

54

0.027

0.010

32

VEGF-A

1

579

190

0.025

0.009

33

Ficolin-4

1

1,026

108

0.024

0.009

34

VF

1

4,965

22

0.022

0.008

35

Ficolin-5

1

999

93

0.019

0.007

36

CTL-2

1

531

163

0.019

0.007

37

Waprin-2

1

408

177

0.016

0.006

38

VEGF-1

1

447

153

0.015

0.006

39

CTL-1

1

639

65

0.010

0.003

40

KUN-2

1

1,542

24

0.008

0.003

41

CTL-4

1

507

59

0.007

0.003

42

HYAL

1

1,344

20

0.006

0.002

43

PDE4

1

1,362

18

0.005

0.002

44

CFX

1

1,452

16

0.005

0.002

45

Waprin-1

1

219

82

0.004

0.002

46

VEGF-3

1

627

12

0.002

0.001

  1. Abbreviations: 3FTx–three-finger toxin, AChE–acetylcholinesterase, CDS–coding sequence, CF–coagulation factor, CTL–C-type lectin, CRISP–cysteine-rich secretory protein, HYAL–hyaluronidase, KUN-Kunitz-type protease inhibitor, NP–natriuretic peptide, PDE–phosphodiesterase, PLA 2–Type II Phospholipase A, SVMPIII–snake venom metalloproteinase (P-III), VEGF–vascular endothelial growth factor, VF–venom factor.