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Table 2 Expression levels of full-length toxin clusters for Hypsiglena sp. based on 10 million reads mapped to coding sequences

From: RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes

Rank

Cluster name

Cluster size

CDS length

Median Coverage

% Toxin reads

% Total reads

1

CRISP-1a

5

720

92,411

16.684

7.256

2

SVMPIII-4

1

1,836

30,460

11.462

4.985

3

SVMPIII-9a

2

1,833

27,697

10.112

4.398

4

SVMPIII-13a

2

1,836

25,321

10.024

4.360

5

SVMPIII-12a

2

1,830

22,893

8.593

3.737

6

NP-1a

12

474

56,846

7.359

3.201

7

SVMPIII-3a

4

1,860

16,209

5.943

2.585

8

SVMPIII-7a

2

1,857

11,689

4.173

1.815

9

SVMPIII-11a

3

1,845

10,816

3.835

1.668

10

SVMPIII-8a

5

1,845

9,629

3.430

1.492

11

CTL-7a

5

471

32,519

3.382

1.471

12

SVMPIII-6a

3

1,854

7,559

2.727

1.186

13

SVMPIII-5

1

1,833

7,058

2.693

1.171

14

CTL-8a

7

480

25,070

2.633

1.145

15

SVMPIII-10a

4

1,827

4,941

1.687

0.734

16

SVMPIII-2

1

1,827

4,305

1.553

0.675

17

SVMPIII-14a

3

1,839

4,236

1.484

0.645

18

Fused

1

582

8,844

0.960

0.418

19

SVMPIII-1

1

1,857

2,406

0.950

0.413

20

3FTx

1

255

1,357

0.070

0.030

21

CTL-6a

2

480

640

0.060

0.026

22

KUN

1

759

423

0.056

0.024

23

CTL-5

1

477

464

0.042

0.018

24

CTL-1

1

483

304

0.029

0.013

25

CTL-3

1

495

239

0.022

0.010

26

VEGF

1

579

108

0.012

0.005

27

CTL-4

1

483

66

0.006

0.003

28

Waprin

1

405

75

0.006

0.002

29

Ficolin-1

1

1,032

21

0.004

0.002

30

Ficolin-2

1

999

21

0.004

0.002

31

Vespryn

1

558

25

0.003

0.001

32

PDE4

1

1,362

9

0.002

0.001

33

CTL-2

1

531

17

0.002

0.001

  1. Abbreviations: 3FTx–three-finger toxin, CDS–coding sequence, CTL–C-type lectin, CRISP–cysteine-rich secretory protein, KUN-Kunitz-type protease inhibitor, PDE–phosphodiesterase, NP–natriuretic peptide, SVMPIII–snake venom metalloproteinase (P-III), VEGF–vascular endothelial growth factor.