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Table 1 Genes deregulated in livers of both 3 and 12 months mice exposed to U and D waters

From: Cross-species toxicogenomic analyses and phenotypic anchoring in response to groundwater low-level pollution

Transcripts Cluster Id Gene name Gene description Fold change
   3 months 12 months
   U vs Ctrl D vs Ctrl U vs Ctrl D vs Ctrl
10603833 Usmg5 Upregulated during skeletal muscle growth 5 -4.53 -4.28 -2.83 -2.95
10374476 Rps17 Ribosomal protein S17 -2.96 -3.19 -1.85 -1.89
10357242 Dbi Diazepam binding inhibitor -2.87 -2.71 -1.84 -2.23
10387816 Rnasek Ribonuclease, RNase K -2.17 -2.33 -1.61 -1.78
10344817 Cspp1 Centrosome and spindle pole associated protein 1 -1.75 -1.62 -1.80 -2.38
10483809 Nfe2l2 Nuclear factor, erythroid derived 2, like 2 -1.66 -1.78 -1.71 -1.81
10500798    -1.57 -1.78 -2.75 -2.78
10598089 mt-Te tRNA glutamic acid, mitochondrial 2.12 2.47 4.20 5.01
10598087 ND6 NADH dehydrogenase subunit 6 2.82 3.37 1.86 3.73
10598073 mt-Tq tRNA glutamine, mitochondrial 4.07 5.85 5.67 7.28
10528191 Speer4d|Speer4c|Speer4e| Spermatogenesis associated glutamate (E)-rich protein 4d/4c/4e 4.13 4.67 1.65 1.80
10598083 mt-Ts1 tRNA serine 1, mitochondrial 5.32 6.71 3.00 4.83
10598091 mt-Tp tRNA proline, mitochondrial 5.62 7.62 3.11 3.85
10598075 mt-Ta tRNA alanine, mitochondrial 5.93 7.82 16.92 26.75
10598023 mt-Tv tRNA valine, mitochondrial 6.17 6.69 4.21 5.75
10519811 Speer8-ps1|Speer7-ps1 Spermatogenesis associated glutamate (E)-rich protein 7/8, pseudogene 1 6.34 6.92 3.13 3.88
10598057 mt-Tr tRNA arginine, mitochondrial 6.40 7.63 10.12 28.13
10436773 Gm7735|Gm9789   6.48 6.90 3.75 3.25
10412517 Gm3002|Gm10021|Gm3512   7.66 10.80 3.88 4.55
10582888    7.70 9.65 2.83 5.64
10598081 mt-Ty tRNA tyrosine, mitochondrial 10.46 13.91 6.51 10.49
10598079 mt-Tc tRNA cysteine, mitochondrial 10.88 15.64 4.72 7.30
10598018 mt-Tf tRNA phenylalanine, mitochondrial 11.56 14.23 14.71 27.37
10598062 mt-Th tRNA histidine, mitochondrial 13.20 15.78 27.68 46.30
10598077 mt-Tn tRNA asparagine, mitochondrial 21.72 32.04 6.55 9.85
10598041 mt-Tk tRNA lysine, mitochondrial 24.14 28.86 39.43 66.79
10598071 mt-Tt tRNA threonine, mitochondrial 27.51 35.77 7.81 15.37
10598064 mt-Tl2 tRNA leucine 2, mitochondrial 58.00 70.56 44.83 70.91
10353034 Snord87 Small nucleolar RNA, C/D box 87 -3.20 -3.39 2.83 2.77
10398451 Rps25|Gm4963 Ribosomal protein S25 | predicted gene 4963 -1.70 -1.81 1.75 1.80
10465831 5730408K05Rik RIKEN cDNA 5730408 K05 gene -2.26 -2.30 4.41 4.10
  1. In bold, genes inversely deregulated in the two data sets. mt- stays for mitochondrial.
  2. The arithmetic fold change is reported.