Comparisons | GWAS modelsa | RMIP ≥ 0.05 | RMIP ≥ 0.25 | ||||||
---|---|---|---|---|---|---|---|---|---|
No. of all significant SNPsb | Proportion of overlapped SNPs (%)c | No. of all significant SNPs | Proportion of overlapped SNPs (%)c | ||||||
10-kb window | 100-kb window | 200-kb window | 10-kb window | 100-kb window | 200-kb window | ||||
GWAS marker density | B vs. C | 326 (151,175) | 26 | 36 | 38 | 45 (25,20) | 13 | 13 | 13 |
D vs. E | 393 (201,192) | 22 | 34 | 39 | 54 (28,26) | 11 | 11 | 15 | |
Genetic map density | C vs. E | 367 (175,192) | 14 | 21 | 23 | 46 (20,26) | 9 | 9 | 9 |
B vs. D | 352 (151,201) | 25 | 29 | 35 | 53 (25,28) | 26 | 28 | 28 | |
GWAS and genetic marker density | C vs. D | 376 (175,201) | 13 | 21 | 22 | 48 (20,28) | 4 | 8 | 8 |
B vs. E | 343 (151,192) | 7 | 13 | 15 | 51 (25,26) | 4 | 4 | 4 | |
GWAS and genetic marker density and P-value | A vs. E | 437 (245,192) | 6 | 12 | 15 | 52 (26,26) | 4 | 4 | 4 |