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Table 1 ORFs in A. niger having aaRS or associated domains

From: Novel and unique domains in aminoacyl-tRNA synthetases from human fungal pathogens Aspergillus niger, Candida albicans and Cryptococcus neoformans

 

aaRS domain

ORF

Predicted sub-cellular localization

Protein length

E-value for HMM prediction

Identity with human homolog (%)

Class I

ArgRS

197261-mRNA

Cyto

646

NA

36

CysRS

211236-mRNA

Cyto

804

0

39

GlnRS

45754-mRNA

Cyto

625

4.4e-247

44

GluRS

56891-mRNA

Nucl

712

0

45

GluRS

121468-mRNA

Mito

427

3.5e-155

37

IleRS

52642-mRNA

Cyto

1077

0

53

IleRS

212883-mRNA

Mito

1524

0

36

LeuRS

183116-mRNA

Mito

989

0

38

LeuRS

52554-mRNA

Cyto

1126

0

45

MetRS

208481-mRNA

Cyto

659

0

48

TrpRS

54362-mRNA

Cyto

433

6e-156

55

TrpRS

209919-mRNA

Mito

391

6e-156

40

TyrRS

54566-mRNA

Mito

611

5.1e-123

41

ValRS

194077-mRNA

Cyto

1315

0

46

Class II

AlaRS

51231-mRNA

Mito

1019

7.4e-37

48

AsnRS

210632-mRNA

Mito

543

1.5e-146

37

AspRS

57039-mRNA

Mito

676

9.5e-179

38

AspRS

56196-mRNA

Cyto

559

3.5e-281

48

AsxRS

207470-mRNA

Cyto_nucl

574

4.7e-270

50

AsxRS

55404-mRNA

Nucl

952

0

45

GlyRS

57294-mRNA

Mito

738

0

51

GlyRS

50342-mRNA

Cyto

667

0

47

HisRS

51854-mRNA

Mito

619

1.4e-287

53

LysRS

47873-mRNA

Cyto

604

0

57

PheRS

55517-mRNA

Mito

514

3.8e-230

38

PheRS α

56159-mRNA

Cyto

518

2.8e-254

47

PheRS β

211951-mRNA

Cyto_nucl

600

0

47

ProRS

210319-mRNA

Cyto

604

0

53

SerRS

57312-mRNA

Cyto

474

5.2e-262

48

ThrRS

51819-mRNA

Cyto

718

0

50

aaRS related proteins

AlaX

189390-mRNA

Cyto

271

1.4e-33

24

DTD

56197-mRNA

Cyto_mito

191

NA

47

P43 homolog

210303-mRNA

Cyto

445

3.1e-159

42

Asn synthase

57091-mRNA

Mito

573

8.8e-57

34

Asn synthase

186429-mRNA

Cyto

694

1.5e-39

27

GatA

170115-mRNA

Extr

504

1.7e-159

39

 

GatB

172989-mRNA

Mito

601

2.2e-138

33

 

GatF

173432-mRNA

Mito

886

8.1e-12

NA

  1. NA in e-value indicates fungal sequences that could be identified by HMM search and were retrieved from NCBI using keyword search.