Table 1 Overview of L. crispatus strains, properties and main findings
Strain & accession | Scaffolds | Plasmid derived contigs | Genome size (Mb) | Conserved genome (%) | CDS | Ortholog groups | Average CDS length | CRISPR/Cas system | Prophage clusters | GIs | Adhesins | Comments |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
125-2-CHN [GenBank:ACPV00000000] | 30 | 0 | 2.31 | 86 | 2082 | 2050 | 902 | Type II | 1 | 6 | 9 | Vaginal isolate from a healthy Chinese woman |
214-1 [GenBank:ADGR00000000] | 187 | 1 | 2.07 | 97 | 2163 | 2135 | 847 | Type II | 2 | 7 | 10 | Human vaginal isolate |
CTV-05 [GenBank:ADML00000000] | 25 | 0 | 2.36 | 90 | 2248 | 2032 | 838 | Type II | 6 | 8 | 9 | Human vaginal isolate; strong adhesion to vaginal cells; health promoting use in treatment and prevention of BV and RUTI |
FB049-03 [GenBank:AGZF00000000] | 5 | 0 | 2.46 | 92 | 2433 | 2332 | 848 | Type II | 3 | 8 | 11 | Human vaginal isolate |
FB077-07 [GenBank:AGZG00000000] | 10 | 1 | 2.70 | 84 | 2643 | 2516 | 837 | Type II | 3 | 21 | 13 | Human vaginal isolate |
JV-V01 [GenBank:ACKR00000000] | 86 | 0 | 2.22 | 90 | 2209 | 2180 | 839 | Type II | 2 | 5 | 12 | Human vaginal isolate |
MV-1A-US [GenBank:ACOG0000000] | 45 | 0 | 2.31 | 90 | 2151 | 2126 | 877 | Type II | 6 | 8 | 9 | Vaginal isolate from a healthy US woman |
MV-3A-US [GenBank:ACQC00000000] | 76 | 0 | 2.44 | 89 | 2330 | 2275 | 859 | Type II | 6 | 14 | 9 | Vaginal isolate from a healthy US woman |
SJ-3C-US* [PATRIC:ADDT00000000] | 201 | 1 | 2.09 | 97 | 2174 | 2138 | 821 | Type II | 1 | 15 | 10 | Vaginal isolate from a healthy US woman |
ST1 [GenBank:NC_014106] | 1 | 0 | 2.04 | 82 | 2022 | 1957 | 896 | Type I | 0 | 10 | 11 | Chicken isolate; adheres also to human vaginal cells; inhibition of APEC adhesion |