Table 1 Summary of the helitron characteristics in the P. ostreatus dikaryotic strain N001
Name/ID | Genome | Scaffold | Start (bp) | End (bp) | Orientation | Size (Kbp) | Autonomous | Captured genes | Intact | RPKM |
|---|---|---|---|---|---|---|---|---|---|---|
HELPO1.1 | PC15 | 5 | 1418337 | 1425442 | - | 7,1 | * | capA2 | * | 38,64 |
HELPO1.1 | PC15 | 7 | 1528175 | 1528175 | - | 7,2 | * | capA | * | 13,64 |
HELPO1.1 | PC15 | 7 | 1387822 | 1395008 | + | 7,2 | * | capA | * | 16,05 |
HELPO1.1 | PC15 | 11 | 702113 | 708712 | + | 6,6 | * | capA | Â | 0,00 |
HELPO1.2 | PC15 | 1 | 1404200 | 1417948 | + | 13,7 | * | capB | * | 1,38 |
HELPO1.2 | PC15 | 11 | 756984 | 764123 | + | 7,1 | * | capB | * | 2,41 |
helpo1.3 | PC15 | 1 | 3742549 | 3754728 | + | 12,2 | Â | capC, CapD, capE, CapF | Â | 0,65 |
helpo1.3 | PC15 | 1 | 4537580 | 4539124 | - | 1,5 | Â | capC | * | 5,43 |
helpo1.3 | PC15 | 2 | 1934871 | 1936414 | - | 1,5 | Â | capC | * | 7,69 |
helpo1.3 | PC15 | 7 | 380915 | 382459 | + | 1,5 | Â | capC | * | 6,33 |
helpo1.3 | PC15 | 7 | 2181803 | 2183334 | + | 1,5 | Â | capC | * | 5,04 |
helpo1.3 | PC15 | 8 | 26555 | 28057 | - | 1,5 | Â | capC | * | 3,29 |
helpo1.3 | PC15 | 8 | 423643 | 425136 | - | 1,5 | Â | capC | * | 5,45 |
helpo1.3 | PC15 | 9 | 258831 | 261375 | - | 1,5 | Â | capC | * | 6,23 |
HELPO2 | PC15 | 1 | 619761 | 62150 | + | 6,4 | * | Â | * | 0,18 |
HELPO2 | PC15 | 5 | 387607 | 398218 | - | 10,6 | * | Â | Â | 0,14 |
HELPO2 | PC15 | 6 | 1150050 | 1156438 | - | 6,4 | * | Â | * | 0,20 |
HELPO2 | PC15 | 7 | 1635256 | 1641644 | - | 6,4 | * | Â | * | 0,19 |
HELPO2 | PC15 | 8 | 1367660 | 1374048 | + | 6,4 | * | Â | * | 0,19 |
HELPO2 | PC15 | 8 | 2234922 | 2241310 | - | 6,4 | * | Â | * | 0,18 |
HELPO2 | PC15 | 8 | 1722302 | 1726240 | + | 3,9 | * | Â | Â | 0,03 |
HELPO2 | PC15 | 11 | 2114358 | 2115721 | + | 1,4 | * | Â | Â | 0,00 |
154430 | PC15 | 2 | 1672984 | 1678495 | - | 5,5 | // | Â | Â | 0,00 |
1035322 | PC15 | 2 | 1778564 | 1779100 | - | 0,5 | // | Â | Â | 0,00 |
1044620 | PC15 | 7 | 2753773 | 2756802 | + | 3,0 | // | Â | Â | 0,00 |
1078941 | PC15 | 8 | 2474562 | 2480319 | + | 5,8 | // | Â | Â | 0,00 |
1078947 | PC15 | 8 | 2505293 | 2510116 | - | 4,8 | // | Â | Â | 0,00 |
1079561 | PC15 | 10 | 1356533 | 1360752 | - | 4,2 | * | Â | Â | 1,00 |
HELPO1.1 | PC9 | 115 | 1 | 7176 | - | 7,2 | * | capA | * | 17,59 |
HELPO1.1 | PC9 | 91 | 1 | 560 | + | 0,6 | Â | capA | Â | 0,0 |
HELPO1.2 | PC9 | 366 | 1 | 3061 | + | 3,1 | * | * | Â | 0,25 |
helpo1.3 | PC9 | 7 | 1079490 | 1082511 | + | 3,0 | Â | * | Â | 2,62 |
helpo1.3 | PC9 | 44 | 2611 | 4188 | - | 1,6 | Â | * | * | 6,41 |
helpo1.3 | PC9 | 142 | 1 | 533 | + | 0,5 | Â | * | Â | 5,37 |
helpo1.3 | PC9 | 360 | 2475 | 3115 | + | 0,7 | Â | * | Â | 5,65 |
helpo1.3 | PC9 | 375 | 1 | 440 | - | 0,4 | Â | * | Â | 3,64 |
helpo1.3 | PC9 | 478 | 373 | 1917 | - | 1,5 | Â | Â | * | 9,27 |
HELPO2 | PC9 | 440 | 1 | 2592 | - | 2,6 | // | * | Â | 0,00 |
48294 | PC9 | 2 | 447393 | 449295 | + | 1,9 | // | Â | Â | 3,07 |
51890 | PC9 | 3 | 2765812 | 2767353 | + | 1,5 | // | Â | Â | 0,00 |
52065 | PC9 | 3 | 5913 | 9386 | + | 3,5 | // | Â | Â | 0,00 |