Skip to main content

Table 1 Summary of the helitron characteristics in the P. ostreatus dikaryotic strain N001

From: Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi

Name/ID Genome Scaffold Start (bp) End (bp) Orientation Size (Kbp) Autonomous Captured genes Intact RPKM
HELPO1.1 PC15 5 1418337 1425442 - 7,1 * capA2 * 38,64
HELPO1.1 PC15 7 1528175 1528175 - 7,2 * capA * 13,64
HELPO1.1 PC15 7 1387822 1395008 + 7,2 * capA * 16,05
HELPO1.1 PC15 11 702113 708712 + 6,6 * capA   0,00
HELPO1.2 PC15 1 1404200 1417948 + 13,7 * capB * 1,38
HELPO1.2 PC15 11 756984 764123 + 7,1 * capB * 2,41
helpo1.3 PC15 1 3742549 3754728 + 12,2   capC, CapD, capE, CapF   0,65
helpo1.3 PC15 1 4537580 4539124 - 1,5   capC * 5,43
helpo1.3 PC15 2 1934871 1936414 - 1,5   capC * 7,69
helpo1.3 PC15 7 380915 382459 + 1,5   capC * 6,33
helpo1.3 PC15 7 2181803 2183334 + 1,5   capC * 5,04
helpo1.3 PC15 8 26555 28057 - 1,5   capC * 3,29
helpo1.3 PC15 8 423643 425136 - 1,5   capC * 5,45
helpo1.3 PC15 9 258831 261375 - 1,5   capC * 6,23
HELPO2 PC15 1 619761 62150 + 6,4 *   * 0,18
HELPO2 PC15 5 387607 398218 - 10,6 *    0,14
HELPO2 PC15 6 1150050 1156438 - 6,4 *   * 0,20
HELPO2 PC15 7 1635256 1641644 - 6,4 *   * 0,19
HELPO2 PC15 8 1367660 1374048 + 6,4 *   * 0,19
HELPO2 PC15 8 2234922 2241310 - 6,4 *   * 0,18
HELPO2 PC15 8 1722302 1726240 + 3,9 *    0,03
HELPO2 PC15 11 2114358 2115721 + 1,4 *    0,00
154430 PC15 2 1672984 1678495 - 5,5 //    0,00
1035322 PC15 2 1778564 1779100 - 0,5 //    0,00
1044620 PC15 7 2753773 2756802 + 3,0 //    0,00
1078941 PC15 8 2474562 2480319 + 5,8 //    0,00
1078947 PC15 8 2505293 2510116 - 4,8 //    0,00
1079561 PC15 10 1356533 1360752 - 4,2 *    1,00
HELPO1.1 PC9 115 1 7176 - 7,2 * capA * 17,59
HELPO1.1 PC9 91 1 560 + 0,6   capA   0,0
HELPO1.2 PC9 366 1 3061 + 3,1 * *   0,25
helpo1.3 PC9 7 1079490 1082511 + 3,0   *   2,62
helpo1.3 PC9 44 2611 4188 - 1,6   * * 6,41
helpo1.3 PC9 142 1 533 + 0,5   *   5,37
helpo1.3 PC9 360 2475 3115 + 0,7   *   5,65
helpo1.3 PC9 375 1 440 - 0,4   *   3,64
helpo1.3 PC9 478 373 1917 - 1,5    * 9,27
HELPO2 PC9 440 1 2592 - 2,6 // *   0,00
48294 PC9 2 447393 449295 + 1,9 //    3,07
51890 PC9 3 2765812 2767353 + 1,5 //    0,00
52065 PC9 3 5913 9386 + 3,5 //    0,00
  1. A transcriptional analysis was performed using the RPKM method and the RNA-seq reads were mapped to the PC15 and PC9 homologous genomes. Symbol *indicates that the element fits the description shown in the header, while // indicates the contrary.