Table 2 Summary of assembly statistics and filtering of survey sequences
Chromosome arm | 5DS | 5DL |
|---|---|---|
Aligned reads no. | 578,521 | 1,282,886 |
Aligned reads % | 61.72 | 56.48 |
Aligned bases no. | 190,520,827 | 385,146,579 |
Aligned bases % | 54.90 | 48.78 |
Singleton reads | 256,024 | 672,427 |
Contigs (>100 bases) | 47,674 | 95,485 |
Bases in contigs | 35,171,389 | 67,393,211 |
Non-aligned bases | 156,537,017 | 404,467,896 |
Estimated arm length (Contigs + non-aligned) | 191.7 MB | 471.9 MB |
Deep contig reads no. | 198,518 | 438,597 |
Deep contig reads % | 21.18 | 19.31 |