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Table 3 5D survey sequence reads with homology to 5 different gene datasets

From: Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

 

Matching reads from 5DS

Matching reads from 5DL

Bdi

Osa

Sbi

UniG

UniP

Bdi

Osa

Sbi

UniG

UniP

Total read no.

5665

4035

4260

18521

8063

13413

9863

11054

39266

18844

B. distachyon

 1303

2737

1826

  2628

 2265

  5598

 6190

  6852

   7111

   7117

O. sativa

 

  374

1618

  2195

 1975

 

 4840

  5704

  5767

  6091

S. bicolor

  

  861

  2216

 1905

  

  4988

  6364

  6788

Unigene set

   

13004

 3610

   

 12055

10660

Uniprot set

    

 3229

    

  6138

Bdi + Osa + Sbi

1210

4208

  1. Values given are the number of 454 reads matching the datasets indicated by row and column headings. Values in italics are the number of reads matching only a single dataset.
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BMC Genomics

ISSN: 1471-2164

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