From: RNA-Seq profile of flavescence dorée phytoplasma in grapevine
locus ID | Abbreviation | Description | RPK (mean) | EI (mean) |
---|---|---|---|---|
Contig12 | contig12 | Group II intron | 2749.2 | 10.9 |
Ctg0426_0019664_0020134_f2_flado_0426_0012 | Imp | Imp | 889.1 | 3.5 |
Ctg0234_0028748_0029098_f2_flado_0234_0025 | comp83 | Hypothetical protein with cold-shock binding domain | 548.8 | 2.1 |
Ctg7221_0018383_0018643_r1_flado_7221_0014 | comp100 | Hypothetical protein | 54.7 | 1.1 |
Ctg0314_0004067_0004231_f2_flado_0314_0005 | comp115 | Hypothetical protein with 1 TMD + SP | 41.7 | 1.4 |
Ctg0482_0033346_0033975_f1_flado_0482_0023 | spoVG | septation protein | 32 | 0.5 |
ysdC-flado_4539_0017 | ysdC | β-glucanase | 29.2 | 0.5 |
Ctg0338_0006451_0007086_f1_flado_0338_0005 | comp126 | Hypothetical protein with 1 TMD + SP | 23.3 | 0 |
vmpB-flado_0031_0011 | vmpB | Variable membrane protein B | 13.1 | 0.1 |
tldD-flado_0426_0020 | tldD | Metalloprotease | 12.2 | 0.2 |
ftsY-flado_0482_0016 | fstY | Signal recognition particle receptor | 9.1 | 0.1 |
Ctg0314_0007223_0007996_f2_flado_0314_0008 | PAM266 | Hypothetical protein (similar to PAM266) | 8 | 0.1 |
CbiO2-flado_0067_0008 | CoABC | Cobalt transporter ATP-binding subunit | 5 | 0.2 |
Ctg5304_0021069_0021488_f3_flado_5304_0021 | osm | OsmC-like protein | 4.8 | 0.1 |
rpoD-flado_4539_0007 | rpoD | RNA polymerase sigma factor | 0 | 0.5 |