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Table 4 Transcripts selected for validation by qRT-PCR

From: RNA-Seq profile of flavescence dorée phytoplasma in grapevine

locus ID Abbreviation Description RPK (mean) EI (mean)
Contig12 contig12 Group II intron 2749.2 10.9
Ctg0426_0019664_0020134_f2_flado_0426_0012 Imp Imp 889.1 3.5
Ctg0234_0028748_0029098_f2_flado_0234_0025 comp83 Hypothetical protein with cold-shock binding domain 548.8 2.1
Ctg7221_0018383_0018643_r1_flado_7221_0014 comp100 Hypothetical protein 54.7 1.1
Ctg0314_0004067_0004231_f2_flado_0314_0005 comp115 Hypothetical protein with 1 TMD + SP 41.7 1.4
Ctg0482_0033346_0033975_f1_flado_0482_0023 spoVG septation protein 32 0.5
ysdC-flado_4539_0017 ysdC β-glucanase 29.2 0.5
Ctg0338_0006451_0007086_f1_flado_0338_0005 comp126 Hypothetical protein with 1 TMD + SP 23.3 0
vmpB-flado_0031_0011 vmpB Variable membrane protein B 13.1 0.1
tldD-flado_0426_0020 tldD Metalloprotease 12.2 0.2
ftsY-flado_0482_0016 fstY Signal recognition particle receptor 9.1 0.1
Ctg0314_0007223_0007996_f2_flado_0314_0008 PAM266 Hypothetical protein (similar to PAM266) 8 0.1
CbiO2-flado_0067_0008 CoABC Cobalt transporter ATP-binding subunit 5 0.2
Ctg5304_0021069_0021488_f3_flado_5304_0021 osm OsmC-like protein 4.8 0.1
rpoD-flado_4539_0007 rpoD RNA polymerase sigma factor 0 0.5
  1. Selected genes are listed according to the IDs of the FD92 annotated genes (locus ID), with the only exception of contig12, which was obtained in this study. The abbreviation used in this work, a brief gene description, the mean of reads per kilobase of transcript (RPK) and the mean of the expression indices (EI, N° of transcript per FD cell) are reported.