Skip to main content

Table 2 Abundance of homeostasis mechanisms in Frankia

From: The ins and outs of metal homeostasis by the root nodule actinobacterium Frankia

Mechanism Counts in Selected Genomes
  Symbol Frankia sp.strain CcI3 Frankiaalni ACN14a Frankia sp.strain QA3 Frankia sp.strain EUN1f Frankia sp.strain EAN1pec Frankia sp.strain EuI1c Frankia sp . strain CN3 Frankia sp.strain DC12 S. viridochromogenes B. subtilis168 C. metallidurans E . coliK12- W3110
Import permeases CbtA 1 1 1 1 1 1 1 1 1 0 0 0
CorA 1 2 1 1 1 1 2 1 3 1 2 1
Ftr1 1 1 1 1 1 2 1 1 1 1 1 0
MgtE 1 1 1 1 1 1 1 1 1 1 0 0
NhlF 1 1 1 0 0 1 1 1 0 0 1 0
Pit 0 1 1 1 0 0 1 0 3 1 1 0
SulP 3 2 2 4 3 2 3 2 3 2 6 1
YcnJ 1 1 1 1 1 1 1 1 2 1 0 0
Zip 2 1 0 0 0 0 0 1 0 0 1 1
Import cassettes CbiMNOQ 0 0 0 1 1 0 0 0 2 1 0 0
CysPUWA 0 0 0 1 0 1 1 1 0 0 1 1
FbpABC 1 0 1 2 2 1 0 0 0 0 0 1
FepBCDG 0 1 1 1 1 1 2 1 2 0 1 1
FhuBCD 1 2 1 0 1 0 0 1 1 5 1 2
Mnt/ZnuABC 1 1 1 1 1 1 1 1 1 2 0 1
Mod ABC 1 1 1 1 1 1 1 1 1 1 1 1
PstABCS 1 1 1 1 1 1 1 1 1 1 1 1
Chaperones storage BFR 1 3 3 2 2 2 2 1 1 0 2 1
CbiX 1 1 1 1 2 1 1 1 3 1 1 0
ChlD 1 1 3 4 2 2 4 2 0 0 1 0
ChlI 2 2 2 3 3 2 2 2 1 0 2 1
CobN 1 1 3 2 1 1 2 3 2 0 0 0
CobW 0 1 1 1 1 1 1 1 1 1 3 2
CopZ 1 1 1 3 3 1 2 1 2 1 7 1
Fe-DPS 1 1 1 1 1 1 1 1 2 2 1 1
FhuF 3 3 3 3 4 1 1 1 4 0 3 1
HypA 2 2 2 2 2 1 1 1 1 0 2 2
HypB 2 2 2 1 1 0 1 0 1 0 2 1
IscA 2 2 2 2 2 1 1 1 1 1 2 4
ModG 1 2 2 2 2 0 0 0 1 0 1 1
MrnA 0 1 1 0 1 1 1 0 1 0 0 0
SenC 2 3 3 3 2 1 1 2 1 1 3 0
UreG 1 1 1 1 1 1 1 1 1 0 1 0
Modification ArsC 0 1 1 0 1 0 0 1 1 3 4 3
GSH 0 0 0 0 1 1 1 0 0 0 1 1
MSH 1 1 1 1 1 1 1 1 1 0 0 0
NasC 1 0 0 0 0 0 2 0 1 1 1 0
NirB 2 1 1 1 1 1 2 1 2 2 2 1
NirD 1 1 1 1 1 1 2 1 1 1 1 1
PbrB 1 1 1 1 1 1 1 1 1 1 3 1
NirA 1 1 1 1 1 1 1 1 1 0 0 0
SorA 0 0 0 2 0 1 1 0 0 0 1 0
TrxA 1 1 2 2 1 2 2 1 2 1 2 1
TrxB 2 4 5 3 2 5 4 3 3 4 5 1
UppP 2 3 3 3 3 2 2 1 1 1 1 1
Exporters ACR3 0 1 1 0 1 0 0 0 1 1 1 0
AqpS 1 2 2 2 1 3 2 2 3 1 2 2
CadD 0 0 1 1 1 0 0 0 0 0 0 0
ChrA 1 0 0 0 0 1 1 2 1 2 5 0
CopA 1 1 1 2 3 1 3 2 2 1 4 1
CopC 2 2 2 3 2 2 2 3 2 1 2 1
CopD 2 2 2 2 2 3 2 2 3 1 2 1
CorC 2 3 3 3 3 2 2 2 4 5 5 6
CzcD 1 1 1 1 1 1 1 1 1 1 1 1
DUF347 2 4 1 2 1 3 3 3 0 0 7 0
FieF 1 1 0 0 1 1 1 1 1 3 1 1
NarK 1 1 1 1 1 2 2 1 1 2 3 2
RcnA 0 0 0 1 1 0 1 0 0 0 0 1
TauZ 0 0 0 0 0 1 1 1 0 0 2 1
TehA 0 0 0 0 0 1 0 0 1 0 0 1
TerC 1 1 1 1 1 1 1 1 1 3 4 4
ZnT-9 1 2 2 1 1 1 2 1 2 0 0 0
  1. Counts indicate the total number of instances of the mechanism based on protein identifiers listed in Additional file 10. Symbols were assigned either by the closest ortholog in well characterized organisms or most commonly used symbol from the literature.