Mapping and analysis of a novel candidate Fusarium wilt resistance gene FOC1 in Brassica oleracea

BMC Genomics

Table 2 Annotation of the B. oleracea genes in the candidate region

Bra genes^a	E-value	Bol genes^b	Gene position on C06^c	Bol IPR annotation^d	AT ID^e	E-value	AT GO annotation^f
_	_	Bol037166	38746794-38747237	DNA polymerase	AT5G18880	5E-21	biological process unknown
_	_	Bol037165	38749215-38750398	Alpha/beta hydrolase	AT4G16690	8E-126	hydrolase activity
_	_	Bol037163	38753393-38754437	Ribosomal protein	AT4G16720	2E-107	ribosomal protein
_	_	Bol037162	38754883-38755278	Exostosin-like	AT4G16745	7E-68	exostosin family protein
_	_	Bol037161	38795305-38795850	transcriptional factor	AT4G16750	2E-73	transcription factor
_	_	Bol037160	38801162-38804053	oxygenase	AT4G16765	1E-117	oxidoreductase activity
Bra012690	0	Bol037159	38810947-38812479	Lipase	AT4G16820	0	lipase activity
Bra012689	0	Bol037158	38813370-38815166	LRR	AT4G16950	2E-82	RPP5; nucleotide binding
Bra012689	2E-90	Bol037157	38816186-38816452	TIR	AT4G16890	1E-32	nucleotide binding
Bra012688	0	Bol037156	38822022-38824544	LRR	AT4G08450	2E-17	disease resistance protein
Bra012687	0	Bol037155	38831452-38833049	Pollen allergen	AT4G17030	3E-117	cellulose and wall loosening

^aB. rapa homologous genes in the candidate region.
^bTen B. oleracea genes in the candidate region. The likely resistance genes and their information are indicated in bold.
^cThe physical position of the ten B. oleracea genes on chromosome C06.
^dInterPro domain annotations for the ten B. oleracea genes obtained from BRAD.
^eThe best hits of the ten B.oleracea genes to A.thaliana (AT).
^fGO annotations for the ten Bol to AT best-hit genes obtained from BRAD.

ISSN: 1471-2164