Table 5 SNP sites discovered by comparison to the honeycreeper reference. Filtered for qual > 30 and depth >6
From: Genomic resources for the endangered Hawaiian honeycreepers
Sample | Positions with known genotype | Heterozygous sites | Sites with non-reference allele | Private non-reference alleles |
|---|---|---|---|---|
Nihoa_Finch_1 | 93,646 | 2,864 | 91,038 | 15,715 |
Nihoa_Finch_2 | 110,844 | 4,137 | 108,297 | 30,168 |
Iiwi | 15,800 | 291 | 12,685 | 524 |
Palila_1 | 17,511 | 571 | 14,580 | 841 |
Amakihi | 50,489 | 2,202 | 22029 | 3,587 |
Palila_2 | 25,795 | 299 | 22,529 | 1,664 |