Table 1 Enriched categories in the genes with abnormal R/m ratio
From: Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo
Term*1 | P Value*2 | Gene*3 |
|---|---|---|
Homologous recombination*4 | 1.90 × 10-04 | ruvC, recB, holA, dnaE |
Ribosome*5 | 1.70 × 10-05 | rplY, rpsR, rplI, asnC, rpsF, rimK |
ncRNA metabolic process*6 | 2.50 × 10-04 | ygfZ, yadB, truB, truA, trmD, rimM, dusB, asnC |
DNA replication*7 | 2.30 × 10-03 | holA, dnaE, dnaG |
Pyrimidine metabolism*8 | 1.40 × 10-03 | pyrC, holA, rpoA, dnaE |
tRNA aminoacylation*9 | 2.90 × 10-02 | yadB, asnC, truA |