Table 2 Number of candidate alkane hydroxylases observed in each of the psychrophile and mesophile genomes examined
From: Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis
Strain | Pair | Accession | LadA | AlmA | AlkB | Uncharacterized AlkB-like | Bacterial p450 | Eukaryotic p450 |
|---|---|---|---|---|---|---|---|---|
Psychrophiles | Â | Â | Â | Â | Â | Â | Â | Â |
1Aeromonas salmonicida A449 | A | CP000644 | 0 | 0 | 0 | 0 | 0 | 0 |
1Aliivibrio salmonicida LFI1238 | B | FM178379 | 0 | 0 | 0 | 0 | 0 | 0 |
2Colwellia psychrerythraea 34H | C | CP000083 | 0 | 0 | 0 | 0 | 0 | 0 |
3Desulfotalea psychrophila LSv54 | D | CR522870 | 0 | 0 | 0 | 0 | 0 | 0 |
1Flavobacterium psychrophilum JIP02 86 | E | AM398681 | 0 | 0 | 0 | 0 | 0 | 0 |
4 Glaciecola psychrophila 170 | F | CP003837 | 0 | 5 | 0 | 1 | 1 | 0 |
5Methanococcoides burtonii DSM 6242 | G | CP000300 | 0 | 0 | 0 | 0 | 0 | 0 |
4 Octadecabacter antarcticus 307 | H | CP003740 | 1 | 0 | 2 | 2 | 1 | 1 |
4 Octadecabacter arcticus 238 | I | CP003742 | 1 | 0 | 2 | 1 | 1 | 1 |
6 Photobacter profundum SS9 | J | CR354532 | 0 | 0 | 0 | 0 | 0 | 1 |
7Pseudoalteromonas haloplanktis TAC125 | K | CR954246 | 0 | 0 | 0 | 0 | 0 | 0 |
3Psychrobacter arcticum 273-4 | L | CP000082 | 0 | 0 | 0 | 0 | 0 | 0 |
3 Psychrobacter cryohalolentis K5 | M | CP000323 | 0 | 1 | 0 | 0 | 0 | 0 |
4 Psychroflexus torquis ATCC700755 | N | CP003879 | 0 | 0 | 0 | 0 | 0 | 1 |
4Psychromonas CNPT3 | O | CP004404 | 0 | 0 | 0 | 0 | 0 | 0 |
6Psychromonas ingrahamii 37 | P | CP000510 | 0 | 0 | 0 | 0 | 0 | 0 |
7Shewanella halifaxensis HAW EB4 | Q | CP000931 | 0 | 0 | 0 | 0 | 0 | 0 |
2Shewanella sediminis HAW-EB3 | R | CP000821 | 0 | 0 | 0 | 0 | 0 | 0 |
6Shewanella violacea DSS12 | S | AP011177 | 0 | 0 | 0 | 0 | 0 | 0 |
8 Terroglobus saanensis SP1PR4 | T | CP002467 | 1 | 0 | 0 | 0 | 2 | 1 |
Mesophiles | Â | Â | Â | Â | Â | Â | Â | Â |
Aeromonas veronii B565 | A | CP002607 | 0 | 0 | 0 | 0 | 0 | 0 |
Vibrio fischeri ES114 | B | CP000020 | 0 | 0 | 0 | 0 | 0 | 0 |
Alteromonas macleodii Deep ecotype | C | CP001103 | 0 | 1 | 0 | 0 | 0 | 0 |
Desulfocapsa sulfexigens DSM 10523 | D | CP003985 | 0 | 0 | 0 | 0 | 0 | 0 |
Flavobacterium indicum GPTSA100 9 | E | HE774682 | 0 | 0 | 0 | 0 | 0 | 0 |
Glaciecola agarilytica 4H37Ye5 | F | CP002526 | 0 | 1 | 0 | 0 | 3 | 0 |
Methanosarcina mazei Tuc01 | G | CP004144 | 0 | 0 | 0 | 0 | 0 | 0 |
Rhodobacter sphaeroides ATCC 17025 | H | CP000661 | 0 | 0 | 1 | 0 | 1 | 0 |
Ketogulonicigenium vulgare Y25 | I | CP002224 | 0 | 1 | 0 | 0 | 0 | 1 |
Vibrio vulnificus YJ016 | J | AP005352 | 0 | 0 | 0 | 0 | 0 | 0 |
Pseudoalteromonas atlantica T6c | K | CP000388 | 0 | 0 | 0 | 0 | 1 | 0 |
Acinetobacter baumannii ACICU | L | CP000863 | 2 | 4 | 1 | 1 | 0 | 0 |
Acinetobacter baumannii AYE | M | CU459141 | 2 | 6 | 1 | 1 | 0 | 0 |
Flavobacteriales bacterium HTCC2170 | N | CP002157 | 0 | 0 | 1 | 0 | 0 | 0 |
Marinobacter aquaeolei VT8 | O | CP000514 | 0 | 3 | 3 | 1 | 2 | 0 |
Alteromonas macleodii English Channel ecotype | P | CP003844 | 0 | 1 | 0 | 0 | 0 | 0 |
Shewanella MR-7 | Q | CP000444 | 0 | 0 | 0 | 0 | 0 | 0 |
Shewanella denitrificans OS217 | R | CP000302 | 0 | 1 | 0 | 0 | 0 | 0 |
Shewanella putrefaciens 200 | S | CP002457 | 0 | 0 | 0 | 0 | 0 | 0 |
Terriglobus roseus DSM18391 | T | CP003379 | 0 | 0 | 0 | 0 | 0 | 1 |