Identification of Wolbachia-responsive microRNAs in the two-spotted spider mite, Tetranychus urticae

BMC Genomics

Table 3 Predicted target genes of the 13 common Wolbachia -responsive miRNAs in the female and male comparisons

miRNA name	log₂(FI/FU)^a	log₂(MI/MU)^a	Target Gene id	log₂(FI/FU)^b	log₂(MI/MU)^b	Gene description	Pathway^c
novel_126	-9.6029	-4.9958	tetur13g00510	2.7968	--	Histone H2B (Fragments)
novel_32	-7.6988	-4.1657	tetur19g00840	2.7184	2.688	-//-
novel_23	-4.8914	2.8724	tetur19g00830	2.9756	--	Tetratricopeptide repeat protein 19, mitochondrial
			tetur10g01260	--	-3.5643	Retrovirus-related Pol polyprotein from transposon 412
novel_105	-4.8984	-4.8537	tetur01g12840	1.9333	--	Adult-specific rigid cuticular protein 15.7
			tetur11g00600	1.1574	--	Cuticle protein 10.9
novel_36	-4.4893	-3.5605	tetur11g00940	6.2399	--	Meiosis arrest female protein 1
novel_16	-4.1131	-5.6105	tetur09g06680	4.1748	2.2697	Glucosylceramidase	YES
			tetur26g00300	4.047	4.5209	Protein lifeguard 1
novel_89	-3.5904	-4.4674	tetur19g00830	2.9756	4.0633	Tetratricopeptide repeat protein 19, mitochondrial
novel_109	-1.9278	-3.8031	tetur04g01490	2.5622	--	-//-
			tetur09g04610	--	1.0918	Multidrug resistance-associated protein 1
novel_43	-1.1435	-2.2486	tetur03g00110	2.9146	--	Protein lethal (2) essential for life	YES
			tetur04g01580	1.9481	--	-//-
			tetur28g01280	2.3157	--	Beta-1,3-galactosyltransferase sqv-2	YES
			tetur87g00010	2.5029	--	Nuclear hormone receptor HR96
			tetur09g04610	--	1.0918	Multidrug resistance-associated protein 1
tur-miR-12b-5p	1.2635	1.1341	tetur06g06620	-2.1594	--	-//-
			tetur26g00570	-8.9015	--	Low-density lipoprotein receptor-related protein 8
novel_33	1.4415	2.8724	--
tur-miR-317-5p	1.5433	1.2203	--
tur-miR-745-3p	1.6556	2.0244	--

^aThe columns two and three show the log2 (fold-change) of miRNAs; ^bThe columns five and six show the log2 (fold-change) of mRNAs. ^cThree target genes have been enriched in the KEGG pathways.

ISSN: 1471-2164