Table 5 GO analyses showing that miRNAs from Malus hupehensis leaves potentially target the juvenile to adult transition-related biological processes

156 ,160,162,398

growth

GO:0040007

0.0005

MDP0000146640,MDP0000155354,MDP0000131481,MDP0000221322;

8

MDP0000256621, MDP0000187512, MDP0000308890,MDP0000193167

166,167,393

developmental maturation

GO:0021700

2.60E-20

MDP0000005879; MDP0000126553,MDP0000319957,MDP0000137461

7

MDP0000125975,MDP0000203334,MDP0000268652

162,166,398

regulation of developmental growth

GO:0048638

1.20E-12

MDP0000187512,MDP0000943529,MDP0000426630,MDP0000308890

5

MDP0000193196

156, 162,166

developmental growth

GO:0048589

1.10E-09

MDP0000119458,MDP0000155354,MDP0000249364,MDP0000187512

5

MDP0000005879

160,164,167,393

auxin mediated signaling pathway

GO:0009734

1.90E-18

MDP0000131481,MDP0000221322,MDP0000256621,MDP0000298182;

8

MDP0000528658,MDP0000319957,MDP0000125975,MDP0000203334

159,160, 393

hormone-mediated signaling pathway

GO:0009755

5.10E-10

MDP0000147309,MDP0000131481,MDP0000221322,MDP0000125975,

6

MDP0000203334,MDP0000268652

159,160,399,858

response to abscisic acid stimulus

GO:0009737

3.0E-10

MDP0000147309,MDP0000131481,MDP0000256621,MDP0000143276

6

MDP0000166425,MDP0000318013

164,166,167,393

response to auxin stimulus

GO:0009733

3.10E-11

MDP0000298182,MDP0000005879,MDP0000319957,MDP0000125975

6

MDP0000203334,MDP0000268652

156,169,172,393

flower development

GO:0009908

6.30E-22

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000164531,

9

MDP0000296716,MDP0000137561,MDP0000125975,MDP0000203334

MDP0000268652

160,166,167

floral organ development

GO:0048437

2.00E-23

MDP0000131481,MDP0000221322,MDP0000256621,MDP0000153538

5

MDP0000268306

156,393,858

androecium development

GO:0048466

1.60E-10

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000249364,

14

MDP0000125975,MDP0000203334,MDP0000268652,MDP0000143276

MDP0000140609.MDP0000931057

156,393,858

stamen development

GO:0048443

1.60E-10

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000249364,

14

MDP0000125975,MDP0000203334,MDP0000268652,MDP0000143276

MDP0000140609.MDP0000931057

172

specification of floral organ identity

GO:0010093

6.90E-06

MDP0000163645,MDP0000181606, MDP0000200319,MDP0000296716

5

MDP0000137561

156

anther development

GO:0048653

2.40E-05

MDP0000146640; MDP0000171877,MDP0000155354,MDP0000297978

6

MDP0000322647,MDP0000249364

172

floral organ formation

GO:0048449

0.00099

MDP0000163645,MDP0000181606, MDP0000200319,MDP0000296716

5

MDP0000137561

172

floral organ morphogenesis

GO:0048444

0.0038

MDP0000163645,MDP0000181606, MDP0000200319,MDP0000296716

5

MDP0000137561

166,167,169,858

regulation of flower development

GO:0009909

0.00012

MDP0000050082,MDP0000319957,MDP0000164531,MDP0000143276

5

MDP0000887107

156,160,164,166,

reproductive structure development

GO:0048608

8.20E-17

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000131481,

8

MDP0000221322,MDP0000256621,MDP0000298182,MDP0000005879

167,168,169,172

reproductive process

GO:0022414

2.70E-13

MDP0000153538,MDP0000137461, MDP0000232417,MDP0000069525,

7

MDP0000161046,MDP0000164531,MDP0000296716

3627,393,398,858

reproductive developmental process

GO:0003006

3.70E-17

MDP0000133746,MDP0000258197,MDP0000125975,MDP0000203334

8

MDP0000268652,MDP0000308890,MDP0000193167,MDP0000143276

159,172

sexual reproduction

GO:0019953

0.14

MDP0000147309,MDP0000163645,MDP0000181606,MDP0000200319,

6

MDP0000296716,MDP0000137561

172

specification of organ identity

GO:0010092

6.90E-06

MDP0000163645,MDP0000181606, MDP0000200319,MDP0000296716

5

MDP0000137561

160,162,164

organ development

GO:0048513

3.10E-26

MDP0000131481, MDP0000221322,MDP0000256621,MDP0000273491,

7

MDP0000187512,MDP0000298182, MDP0000528658

156,159, 858

leaf development

GO:0048366

5.90E-12

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000249364,

6

MDP0000147309, MDP0000143276

156, 3627,393

shoot development

GO:0048367

4.60E-13

MDP0000155354,MDP0000297978,MDP0000133746,MDP0000258197,

7

MDP0000125975,MDP0000203334,MDP0000268652

159,166, 858

leaf morphogenesis

GO:0009965

4.60E-13

MDP0000147309,MDP0000005879,MDP0000050082,MDP0000133817,

5

MDP0000143276

166,167,168

xylem and phloem pattern formation

GO:0010051

2.70E-14

MDP0000005879,MDP0000319957,MDP0000153538,MDP0000137461,

5

MDP0000069525

160, 393,828

root development

GO:0048364

7.60E-22

MDP0000131481, MDP0000221322,MDP0000256621,MDP0000125975

8

MDP0000203334,MDP0000268652,MDP0000143276,MDP0000253904

169,172,858

fruit development

GO:0010154

6.50E-06

MDP0000296077,MDP0000296716,MDP0000137561,MDP0000143276,

6

MDP0000140609,MDP0000887107

156,159,160

phyllome development

GO:0048827

1.80E-11

MDP0000155354,MDP0000297978,MDP0000249364,MDP0000147309

5

MDP0000778465

156,162, 858

tissue development

GO:0009888

5.30E-21

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000187512,

5

MDP0000143276

164, 168,172

meristem development

GO:0048507

6.30E-27

MDP0000298182, MDP0000528658,MDP0000069525,MDP0000161046,

6

MDP0000296716,MDP0000137561

156,162,166

regulation of meristem development

GO:0048509

1.30E-08

MDP0000146640,MDP0000155354,MDP0000297978,MDP0000187512

6

MDP0000005879,MDP0000126553

164, 167,168

meristem structural organization

GO:0009933

8.40E-15

MDP0000298182,MDP0000550049,MDP0000232417,MDP0000069525,

5

MDP0000305971

162,166

meristem growth

GO:0035266

3.40E-10

MDP0000187512,MDP0000298182, MDP0000528658,MDP0000050082,

5

MDP0000943529