a. | Â | Â | Missing Sequence | Failed assembly of repeat sequence tracts | Paralogous cross identification | Sequencing Discrepancy | ||||
---|---|---|---|---|---|---|---|---|---|---|
Isolate | CDS count | Total number of bases | CDS count | total number of bases | CDS count | number of bases § | CDS count | total number of bases § | CDS count | Number of bases affected |
Z2491 | 1876 | 1693839 | 4 (0.2%) | 5408 | 2 (0.2%) | 3039 | 5 (0.3%) | 4737 | 12 (0.6%) | 32 |
FAM18 | 1914 | 1767562 | 9 (0.5%) | 21895 | 6 (0.3%) | 9070 | 8 (0.4%) | 6990 | 9 (0.5%) | 24 |
G2136 | 1904 | 1718346 | 7 (0.4%) | 14484 | 10 (0.5%) | 13125 | 12 (0.6%) | 4974 | 25 (1.3%) | 90 |
H44/76 | 1975 | 1784201 | 8 (0.4%) | 16716 | 7 (0.4%) | 14458 | 17 (0.9%) | 4824 | 25 (1.3%) | 76 |
b. | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Isolate | Loci Present | Loci with identical sequence match | Loci with nucleotide sequence discrepancy | Loci that are present but incomplete | Â | Â | ||||
Z2491 | 1872 (99.8%) | 1801 (96.2%) | 19 (1.0%) | 51 (2.7%) | Â | Â | ||||
FAM18 | 1905 (99.5%) | 1775 (93.2%) | 23 (1.2%) | 107 (5.6%) | Â | Â | ||||
G2136 | 1897 (99.6%) | 1757 (92.6%) | 47 (2.5%) | 93 (4.9%) | Â | Â | ||||
H44/76 | 1967 (99.2%) | 1821 (92.6%) | 49 (2.5%) | 97 (4.9%) | Â | Â |