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Table 4 Concordance of genome-wide association analyses for the New Mexico calves with the loci most strongly associated with BRDC susceptibility for all analyses

From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Chromosome (location Mb) EMMAX-GRM+ GBLUP+ FvR+ EIGENSTRAT+ No. SNPs^ Lead SNP# Score*
BTA16 (70–71) 2 3 2 31 10 rs41617348 38
BTA14 (7–8) 5 48 30 7 17 rs109009102 90
BTA18 (65–66) 58 39 62 90 4 rs135115567 249
BTA12 (77–78) 62 30 175 14 1 rs134174086 281
BTA5 (23–24) 1 104 4 192 4 rs109319628 301
BTA13 (56–57) 38 19 184 61 7 rs41630678 302
BTA2 (2–3) 18 65 61 180 31 rs134633034 324
BTA13 (71–72) 112 94 116 38 11 rs133881876 360
BTA16 (64–65) 36 28 36 261 1 rs42692646 361
BTA28 (36–37) 84 23 204 89 2 rs136647452 400
BTA21 (47–48) 88 91 82 144 2 rs134318902 405
BTA25 (22–23) 40 22 98 273 6 rs134095535 433
BTA13 (67–68) 3 6 168 259 6 rs41700634 436
BTA10 (28–29) 145 75 74 167 6 rs136924615 461
BTA17 (72–73) 129 187 178 146 3 rs134357791 640
BTA14 (9–10) 124 179 237 159 2 rs136578677 699
BTA21 (50–51) 73 50 278 322 1 rs133167991 723
BTA19 (26–27) 128 38 81 590 3 rs110385484 837
BTA14 (10–11) 159 344 216 142 5 rs110172337 861
BTA8 (63–64) 194 161 15 491 14 rs43557067 861
BTA13 (6–7) 31 301 389 152 1 rs135796451 873
BTA13 (53–54) 44 82 403 342 13 rs42388964 882
  1. +Reflects the ranking of the best (lowest) ranking SNP for that genomic region for that analysis. Only scores <1000 are shown.
  2. ^Number of SNPs ranked in the top 200 SNPs (top 0.03%) that are found in this genomic region as associated with BRDC susceptibility across the different analyses.
  3. #The rs SNP identification number for the SNP with the lowest ranking for the QTL.
  4. *Score is the sum of the ranking of the best ranking SNP for that genomic region across all analyses.