Table 4 Concordance of genome-wide association analyses for the New Mexico calves with the loci most strongly associated with BRDC susceptibility for all analyses
From: Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves
Chromosome (location Mb) | EMMAX-GRM+ | GBLUP+ | FvR+ | EIGENSTRAT+ | No. SNPs^ | Lead SNP# | Score* |
|---|---|---|---|---|---|---|---|
BTA16 (70–71) | 2 | 3 | 2 | 31 | 10 | rs41617348 | 38 |
BTA14 (7–8) | 5 | 48 | 30 | 7 | 17 | rs109009102 | 90 |
BTA18 (65–66) | 58 | 39 | 62 | 90 | 4 | rs135115567 | 249 |
BTA12 (77–78) | 62 | 30 | 175 | 14 | 1 | rs134174086 | 281 |
BTA5 (23–24) | 1 | 104 | 4 | 192 | 4 | rs109319628 | 301 |
BTA13 (56–57) | 38 | 19 | 184 | 61 | 7 | rs41630678 | 302 |
BTA2 (2–3) | 18 | 65 | 61 | 180 | 31 | rs134633034 | 324 |
BTA13 (71–72) | 112 | 94 | 116 | 38 | 11 | rs133881876 | 360 |
BTA16 (64–65) | 36 | 28 | 36 | 261 | 1 | rs42692646 | 361 |
BTA28 (36–37) | 84 | 23 | 204 | 89 | 2 | rs136647452 | 400 |
BTA21 (47–48) | 88 | 91 | 82 | 144 | 2 | rs134318902 | 405 |
BTA25 (22–23) | 40 | 22 | 98 | 273 | 6 | rs134095535 | 433 |
BTA13 (67–68) | 3 | 6 | 168 | 259 | 6 | rs41700634 | 436 |
BTA10 (28–29) | 145 | 75 | 74 | 167 | 6 | rs136924615 | 461 |
BTA17 (72–73) | 129 | 187 | 178 | 146 | 3 | rs134357791 | 640 |
BTA14 (9–10) | 124 | 179 | 237 | 159 | 2 | rs136578677 | 699 |
BTA21 (50–51) | 73 | 50 | 278 | 322 | 1 | rs133167991 | 723 |
BTA19 (26–27) | 128 | 38 | 81 | 590 | 3 | rs110385484 | 837 |
BTA14 (10–11) | 159 | 344 | 216 | 142 | 5 | rs110172337 | 861 |
BTA8 (63–64) | 194 | 161 | 15 | 491 | 14 | rs43557067 | 861 |
BTA13 (6–7) | 31 | 301 | 389 | 152 | 1 | rs135796451 | 873 |
BTA13 (53–54) | 44 | 82 | 403 | 342 | 13 | rs42388964 | 882 |