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Table 7 Selected genotype-dependent regulated genes under water stress

From: Transcriptomic and proteomic analyses of a pale-green durum wheat mutant shows variations in photosystem components and metabolic deficiencies under drought stress

Probe set ID

Gene name

Arabidopsis ID

Log2ratio WT stress/WT control

Log2ratio M stress/M control

Log2ratio M/WT under water stres

PHOTOSYNTHESIS AND PIGMENT SYNTHESIS

Ta.23025.1.A1_at

LHB1B2; Light-harvesting complex II chlorophyll a/b binding protein 1

AT2G34420

1.14

-

-

Ta.28496.1.A1_x_at

-

2.04

1.02

Ta.30702.1.S1_x_at

-

1.63

-

Ta.3249.2.S1_x_at

-

1.13

-

Ta.3249.3.A1_at

-

1.20

-

Ta.18362.1.A1_at

ELIP1; Early light-inducible protein

AT3G22840

-1.80

-

1.41

Ta.23419.1.S1_x_at

-1.37

-

0.95

Ta.8718.2.S1_at

ATPD; F-type H+ -transporting ATPase subunit delta

AT4G09650

-

1.47

-

Ta.8718.2.S1_x_at

-

1.29

-

Ta.3243.1.S1_at

HEMA1; Glutamyl-tRNAreductase 1

AT1G58290

-

1.52

-

Ta.3243.1.S1_x_at

-

1.47

-

Ta.20830.1.A1_at

RUBISCO small subunit; Ribulose bisphosphate carboxylase small chains. chloroplast precursor

TC371960b

-

1.36

1.04

TaAffx.128414.24.A1_s_at

RUBISCO large subunit

ATCG00490

-

-1.64

-0.85

Ta.17243.1.S1_at

MVA1; Acetyl-CoA C-acetyltransferase/hydroxymethylglutaryl-CoA synthase

AT4G11820

-

1.13

-

Ta.3366.1.S1_at

DXS; 1-deoxy-D-xylulose-5-phosphate synthase; CLA1 (Cloroplastos Alterados 1);

AT4G15560

-

1.55

-

Ta.20776.1.S1_at

PSY; Phytoene synthase

AT5G17230

-

1.07

-

OXIDATIVE STRESS AND ROS SIGNALING

Detoxification

Ta.11386.2.S1_a_at

TAPX; Thylakoidal ascorbate peroxidase

AT1G77490

-

1.25

-

Ta.11386.2.S1_x_at

-

1.31

-

Ta.488.2.S1_at

APX4; Ascorbate peroxidase 4

AT4G09010

-

1.7

1.73

Ta.23079.1.S1_a_at

APX1; Ascorbate peroxidase 1

AT1G07890

-

-1.03

-

Ta.30028.1.S1_s_at

PER12; Peroxidase 12

AT1G71695

-

-1.62

-

TaAffx.613.2.A1_x_at

Peroxidase. putative

AT4G31760

1.12

-

-

Ta.18560.1.S1_at

AT4G33420

-

-1.78

-

Ta.21505.1.S1_at

AT1G49570

-

-1.29

-

Ta.30697.1.S1_at

AT5G05340

-

-1.05

-

TaAffx.39568.2.S1_at

AT5G58390

-

-1.57

-

Ta.6127.1.S1_at

Peroxiredoxin type 2. putative

AT3G52960

1.22

-

-

TaAffx.100459.1.S1_at

Glutaredoxin family protein

AT3G62950

1.32

-

-

Ta.8571.1.S1_x_at

Glyoxalase I family protein

AT1G80160

-

-1.03

-1.07

TaAffx.79142.1.S1_at

ATGLX1; Glyoxalase I homolog; lactoylglutathione lyase

AT1G11840

-

-0.76

-

Ta.8571.1.S1_a_at

Glyoxalase I family protein; lactoylglutathione lyase family protein

AT1G80160

-

-1.04

-

Ta.8571.1.S1_x_at

-

-1.03

-1.07

Ta.23704.1.S1_s_at

ATGSTF13; Glutathione transferase

AT3G62760

-

-1.36

-

Ta.303.2.S1_at

-

-1.08

-

Ta.3681.1.S1_x_at

ATGSTU19; Glutathione S-transferase TAU 19

AT1G78380

-1.02

-

-

TaAffx.79276.1.S1_x_at

ERD9; Early-responsive to dehydration 9; glutathione transferase

AT1G10370

-

-1.23

-

Ta.21001.1.S1_at

GGT1; Gamma-glutamyl transpeptidase 1

AT4G39640

-

-0.99

-

TaAffx.64682.1.S1_at

RBOHD; Respiratory burst oxidase homologue D

AT5G47910

-

1.07

-

Signaling

Ta.4936.1.S1_at

CIPK2; CBL-Interacting protein kinase 2

AT5G07070

1.23

-

-

Ta.8465.1.S1_at

CIPK6; CBL-Interacting protein kinase 6

AT4G30960

1.46

-

-

Ta.5041.1.S1_at

CIPK23; CBL-Interacting protein kinase 23

AT1G30270

-

-1.59

-1.06

Ta.5041.2.S1_a_at

-

-1.22

-

Ta.5272.3.S1_x_at

CBL1; Calcineurin B-like protein 1

AT4G17615

-

-1.04

-

Ta.236.1.S1_at

MAPK3; MAP kinase 3

AT3G45640

-

-1.20

-

CARBOHYDRATE METABOLISM

Galactose and Raffinose family metabolism

Ta.26092.1.S1_at

SIP1; Putative galactinol--sucrose galactosyl transferase 1; Raffinose synthase

AT1G55740

1.06

-

-

Ta.6023.1.S1_at

SIP2; Putative galactinol--sucrose galactosyl transferase 2

AT3G57520

1.20

-

-

Ta.7541.2.S1_a_at

GalAK; Galactokinase

AT3G10700

1.27

-

-

Trehalose synthesis

Ta.20649.1.S1_x_at

ATTPS6; Alpha,alpha-trehalose-phosphate synthase 6

AT1G68020

1.47

-

-1.14

Starch degradation

Ta.10281.1.S1_a_at

AMY1; Alpha-amylase-like

AT4G25000

1.21

-

-

Ta.16135.1.A1_at

CT-BMY; Chloroplast Beta-Amylase

AT4G17090

-1.51

-

-

TaAffx.68872.1.S1_at

-1.25

-

-

Ta.8827.1.S1_at

DPE2; Disproportionating enzyme 2

AT2G40840

-

1.09

-

Sucrose hydrolisis

Ta.9000.1.S1_at

BFRUCT3; Beta-fructosidase; invertase, vacuolar

AT1G62660

1.51

-

-1.33

Ta.2788.1.A1_at

Sucrose:sucrose 1-fructosyltransferase

B5TK35a

-

1.48

-

Ta.2789.2.S1_at

Sucrose:fructan 6-fructosyltransferase

Q96466a

-

1.49

1.18

Cellulose synthesis

Ta.12382.1.S1_at

ATCSLB02; Cellulose synthase

AT2G32620

1.04

-

-

Ta.12382.1.S1_x_at

1.11

-

-

Ta.7192.1.S1_at

ATCSLC12; Cellulose synthase like C12

AT4G07960

1.15

-

-

Ta.4447.1.S1_at

CESA1; Cellulose synthase 1

AT4G32410

1.24

-

-

Ta.4447.1.S1_x_at

1.40

-

-

Ta.4447.2.S1_x_at

CESA3; Cellulose synthase 3

AT5G05170

1.16

-

-

Ta.12382.3.S1_at

ATCSLB05; Cellulose synthase

AT4G15290

-

1.09

-

Ta.5628.1.A1_at

IRX9; Irregular xylem 9; xylosyltransferase

AT2G37090

1.81

-

-1.30

Ta.29111.1.A1_at

XT2; UDP-Xylosyltransferase 2

AT4G02500

1.26

-

-1.32

Ta.13337.1.S1_at

Xyloglucan:xyloglucosyl transferase, putative

AT5G57540

1.38

-

-1.59

Ta.13337.2.S1_at

1.21

-

-1.41

Ta.13337.2.S1_x_at

1.44

-

-1.57

TCA AND RELATED PATHWAYS

Pyruvate metabolism and glyoxylate cycle

Ta.18775.1.S1_at

NADP-ME4; NADP-malic enzyme 4

AT1G79750

1.11

-

-

Ta.25543.2.S1_at

NADP-ME3; Malate dehydrogenase (oxaloacetate-decarboxylating)

AT5G25880

1.20

-

-

Ta.13280.1.S1_a_at

PCK1; Phosphoenolpyruvate carboxykinase

AT4G37870

1.05

-

-

Ta.13280.2.A1_at

1.10

-

-

Ta.23970.1.A1_x_at

MLS; Malate synthase

AT5G03860

1.92

-

-1.31

Ta.23989.1.A1_at

ICL; Isocitrate lyase

AT3G21720

2.38

-

-1.90

TaAffx.79218.1.S1_at

1.63

-

-1.35

Ta.19423.1.S1_a_at

PDC2; Pyruvate decarboxylase-2

AT5G54960

-

-1.14

-

Ta.13281.1.S1_at

Pyruvate decarboxylase. putative

AT5G01320

-

-1.07

-

Amino acid metabolism

Ta.15150.1.S1_at

MCCA; Methylcrotonoyl-CoA carboxylase subunit alpha

AT1G03090

1.09

-

-

Ta.15150.1.S1_x_at

1.12

-

-

Ta.30569.1.S1_a_at

MCCB; Methylcrotonoyl-CoA carboxylase beta chain

AT4G34030

1.10

-

-

Ta.12252.1.S1_s_at

BCE2; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyltransacylase)

AT3G06850

1.13

-

-

Glutamate metabolism

TaAffx.129066.1.S1_at

GAD; Glutamate decarboxylase 1

AT5G17330

-

-1.08

-

Ta.25990.1.A1_at

GAD3; Glutamate decarboxylase 3

AT2G02000

-

-1.42

-1.05

Ta.25990.1.A1_x_at

-

-1.53

-1.11

Ta.1870.1.S1_a_at

GDH2; Glutamate dehydrogenase 2

AT5G07440

-

-1.31

-1.23

Ta.21001.1.S1_at

GGT1; Gamma-glutamyl transpeptidase 1

AT4G39640

-

-0.99

-

Ta.30684.1.S1_at

AO; L-aspartate oxidase

AT5G14760

-

-1.06

-

REGULATORS OF CARBON METABOLISM AND SENSING

Ta.12733.1.S1_at

SAL1; Inositol or phosphatidylinositol phosphatase

AT5G63980

-

-1.02

-

Ta.4492.1.S1_at

PI3P5K; Phosphatidylinositol-3-phosphate 5-kinase

AT1G71010

-

1.02

-

Ta.10130.1.S1_at

RAP2.12; Related to AP2 12

AT1G53910

1.05

-

-1.32

Ta.13336.1.S1_at

RAP2.7; Related to AP2 7

AT2G28550

1.68

-

-1.05

Ta.21035.1.S1_at

RAP2.8; RAV2 (Regulator of the ATPase of the vacuolar membrane)

AT1G68840

-

-2.02

-1.44

Ta.27316.1.S1_at

-

-1.11

-

TaAffx.18447.1.S1_at

BZIP63; Basic Leucine Zipper 63; BZO2H3

AT5G28770

-

-1.84

-1.05

TaAffx.18447.3.S1_s_at

-

-2.16

-1.42

TaAffx.18447.5.S1_s_at

-

-1.55

-1.03

CHLOROPLAST TRANSCRIPTION AND TRANSLATION

TaAffx.27156.1.S1_at

RNA polymerase beta' subunit-2

ATCG00170

-

1.24

-

TaAffx.107547.1.S1_at

RNA polymerase beta' subunit-1

ATCG00180

-

1.08

-

TaAffx.113923.1.S1_at

Chloroplast DNA-dependent RNA polymerase B subunit

ATCG00190

-

1.26

-

Ta.769.1.S1_at

PTAC16; Plastid transcriptionally active 16

AT3G46780

-

1.08

-

TaAffx.128946.4.S1_at

Chloroplast ribosomal protein S2

ATCG00160

-

1.18

-

OTHERS

     

Ta.5161.3.S1_at

CRK29; Cystein-rich RLK (Receptor-like protein kinase) 29

AT4G21410

-

-1.73

-

Ta.5161.3.S1_x_at

-

-1.32

-

Ta.6870.2.S1_a_at

MKK6; MAP kinase kinase 6

AT5G56580

-

-1.08

 
  1. Selected genes were specifically significant regulated by the wild-type (WT) and the mutant (M) under water stress compared with the same genotype under well-watered (control) conditions. Last column (M vs WT) compares mutant versus WT expression under water stress. Positive and negative values indicate upregulation and downregulation respectively, whereas no statistically significant differences are indicated with a dash (-).
  2. aUniProt ID from Triticum turgidum subsp. durum.
  3. bBlast executed against TaGI (DFCI) Wheat Gene Index: TC371960. homologue to UniRef100_P26667.
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BMC Genomics

ISSN: 1471-2164

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