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Table 1 Variants statistics

From: Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations

 

RSV

SM

Common

SNPs

206,867 (199,502)

177,179 (169,704)

3,343 (3,160)

Deletions

46,433

44,561

25,208

Insertions

77,882

75,984

55,668

Unbalanced insertions

6,537

6,626

1,343

Total

337,719

304,350

85,562

  1. Number of sequence variants in Vesuviano (RSV) and San Marzano (SM) varieties compared to the reference genome (SL240) In brackets is reported the number of unambiguous SNPs In the last column the number of variants in common between the two varieties is shown.