Table 6 Number and percentage of polymorphic genes and number of variants identified for each fruit quality-related class of genes in Vesuviano (RSV) and San Marzano (SM) varieties Data are referred to the tomato reference genome (SL240)
From: Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations
| Â | Â | RSV | SM | ||||
|---|---|---|---|---|---|---|---|
Gene class | Genes no | Polymorphic genes | Variants | Polymorphic genes | Variants | ||
No | % | No | No | % | No | ||
Ascorbate biosynthesis | 23 | 18 | 783 | 265 | 18 | 783 | 349 |
MEP/carotenoid pathway | 46 | 35 | 761 | 337 | 34 | 739 | 351 |
Ethylene-related genes | 52 | 48 | 923 | 466 | 44 | 846 | 448 |
Cell wall | 718 | 589 | 820 | 5,303 | 562 | 783 | 4,471 |
Transcription factors | 2,025 | 1,710 | 844 | 17,215 | 1,662 | 821 | 15,412 |
Transcription regulators | 434 | 353 | 813 | 2,660 | 344 | 793 | 2,496 |
Total | 3,298 | 2,753 | Â | 26,246 | 2,664 | Â | 23,527 |