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Table 4 Target genes identified by degradome sequencing in Brassica campestris

From: Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensi s by high-throughput sequencing and degradome analysis

miRNA family Target gene Target description Homologous to Arabidopsis Cleavage site Reads Category Conserved in A. thaliana
bra-miR156 Bra032822 Squamosa promoter-binding protein-like 11, transcription factor AT1G27360 (SPL11) 1009 1 4 Y
  Bra010949 Squamosa promoter-binding protein-like 10, transcription factor AT1G27370 (SPL10) 1006 1 4 Y
  Bra030041 Squamosa promoter-binding protein-like 10, transcription factor AT1G27370 (SPL10) 1030 1 4 Y
bra-miR159 Bra034842 MYB domain protein 65; DNA binding/transcription factor AT3G11440 (ATMYB65) 946 6 2 Y
  Bra002042 MYB domain protein 65; DNA binding/transcription factor AT3G11440 (ATMYB65) 934 6 0 Y
  Bra035547 MYB domain protein 120; DNA binding/transcription factor AT5G55020 (ATMYB120) 1120 1 4 Y
bra-miR161 Bra027636 PPR repeat-containing protein AT1G64580 241 1 4  
  Bra028267 PPR repeat-containing protein AT1G12300 982 1 4  
bra-miR172 Bra017809 AP2 (APETALA 2)-like factor; transcription factor AT4G36920 (AP2) 1192 1 4 Y
  Bra011741 AP2 (APETALA 2)-like factor; transcription factor AT4G36920 (AP2) 1192 1 4 Y
bra-miR824 Bra011509 AGL16 (AGAMOUS-like 16); transcription fctor AT3G57230 (AGL16) 750 1 4 Y
bra-miR1885 Bra036417 Disease resistance protein (TIR-NBS-LRR class), putative AT2G14080 192 1 4  
  Bra038872 Disease resistance protein (TIR-NBS-LRR class), putative AT5G11250 198 1 4  
bra-miRn4 Bra012382 Unknown protein AT2G27670 554 3 3  
  Bra012383 Unknown protein AT1G23560 1439 3 3