Table 4 Target genes identified by degradome sequencing in Brassica campestris
miRNA family | Target gene | Target description | Homologous to Arabidopsis | Cleavage site | Reads | Category | Conserved in A. thaliana |
|---|---|---|---|---|---|---|---|
bra-miR156 | Bra032822 | Squamosa promoter-binding protein-like 11, transcription factor | AT1G27360 (SPL11) | 1009 | 1 | 4 | Y |
| Â | Bra010949 | Squamosa promoter-binding protein-like 10, transcription factor | AT1G27370 (SPL10) | 1006 | 1 | 4 | Y |
| Â | Bra030041 | Squamosa promoter-binding protein-like 10, transcription factor | AT1G27370 (SPL10) | 1030 | 1 | 4 | Y |
bra-miR159 | Bra034842 | MYB domain protein 65; DNA binding/transcription factor | AT3G11440 (ATMYB65) | 946 | 6 | 2 | Y |
| Â | Bra002042 | MYB domain protein 65; DNA binding/transcription factor | AT3G11440 (ATMYB65) | 934 | 6 | 0 | Y |
| Â | Bra035547 | MYB domain protein 120; DNA binding/transcription factor | AT5G55020 (ATMYB120) | 1120 | 1 | 4 | Y |
bra-miR161 | Bra027636 | PPR repeat-containing protein | AT1G64580 | 241 | 1 | 4 | Â |
| Â | Bra028267 | PPR repeat-containing protein | AT1G12300 | 982 | 1 | 4 | Â |
bra-miR172 | Bra017809 | AP2 (APETALA 2)-like factor; transcription factor | AT4G36920 (AP2) | 1192 | 1 | 4 | Y |
| Â | Bra011741 | AP2 (APETALA 2)-like factor; transcription factor | AT4G36920 (AP2) | 1192 | 1 | 4 | Y |
bra-miR824 | Bra011509 | AGL16 (AGAMOUS-like 16); transcription fctor | AT3G57230 (AGL16) | 750 | 1 | 4 | Y |
bra-miR1885 | Bra036417 | Disease resistance protein (TIR-NBS-LRR class), putative | AT2G14080 | 192 | 1 | 4 | Â |
| Â | Bra038872 | Disease resistance protein (TIR-NBS-LRR class), putative | AT5G11250 | 198 | 1 | 4 | Â |
bra-miRn4 | Bra012382 | Unknown protein | AT2G27670 | 554 | 3 | 3 | Â |
| Â | Bra012383 | Unknown protein | AT1G23560 | 1439 | 3 | 3 | Â |