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Table 2 QTLs identified through a multi-SNP regression model fitted with relative net root growth (RNRG) data

From: Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan

QTL Chr SNP_ID Position (Mbp) -log10( P) Effect R P 2(%) CI (Mbp)
qALT2 2 S2_212940514 212.94 4.83 9.14 15.47 208.20 - 215.41
qALT3 3 S3_187460236 187.46 8.68 13.11 27.51 186.73 - 188.90
qALT5 5 S5_30301926 30.30 5.46 9.82 17.56 18.70 - 40.10
qALT6 6 ZmMATE1 5.86 9.74 14.21 30.54 5.44 - 5.96
qALT8 8 S8_22681622 22.68 6.17 10.43 19.86 17.06 - 27.64
R T 2 (%)      62.78  
  1. Chr: maize chromosome; SNP_ID indicates the chromosome followed by the physical position in bp; ZmMATE1 is the sequence-tagged site marker developed within ZmMATE1.
  2. The position of each QTL was determined in Mbp (Mega base pairs) as the highest -log10 (P-value).
  3. R P 2(%) is the percentage of the phenotypic variance explained by each QTL and R T 2(%) is the percentage of the phenotypic variance explained by the full model, including all significant QTLs.
  4. CI is the 95% confidence interval of the QTL position.