Table 1 Predicted TAL effector targeted genes in C. sinensis that are transcriptionally regulated by Xc in the presence of Ch or, by the heterologous expression of the TAL effector
Microarray data (fold change) | Sweet orange genes with | Homologous gene description | Functional category | References |
|---|---|---|---|---|
PthA2 binding sites | ||||
PthA2 x GUS (4.0) | orange1.1g032466m.g | Pepper UPA22 (UPA22) | GA response | |
orange1.1g031880m.g | Tobacco rac-like GTPase 1 (RAC) | Auxin response | [53] | |
orange1.1g001197m.g | Rat transcription activator BRG1 (BRG1) | Cell growth | [54] | |
PthA2 x GUS (-3.1) | orange1.1g023431m.g | Xyloglucan endotransglucosylase (XET) | Cell growth | [55] |
orange1.1g040761m.g | Castor bean LOB domain protein (LOB2) | Defense | [56] | |
PthA2 x GUS (-3.1) | orange1.1g037640m.g | Tobacco UDP-glucosyltransferase (UDPGT) | Defense | [57] |
PthA4 binding sites | ||||
Xc + Ch x Ch (3.8) | orange1.1g024897m.g | Tobacco 14-3-3 protein (14-3-3) | Cell growth | |
PthA4 x GUS (11.4) | orange1.1g017949m.g | Citrus limetta dioxygenase (DIOX) | Cell growth | |
PthA4 x GUS (5.2) | orange1.1g018649m.g | Tobacco cysteine proteinase (CP) | Defense | |
orange1.1g037138m.g | C. trifoliata NBS-LRR protein (CCNBS1) | Defense | [65] | |
PthC1 binding sites | ||||
orange1.1g041266m.g | Tomato self pruning-interacting protein 1 (SIP1) | Cell growth | [66] | |
orange1.1g010756m.g | Potato Ca+2-dependent protein kinase (CDPK) | Cell growth | [67] | |
orange1.1g039072m.g | Potato CC-NBS-LRR protein (CCNBS2) | Defense | [68] | |
orange1.1g042296m.g | Sunflower CC-NBS-LRR protein (CCNBS3) | Defense | [69] | |
Multiple EBEs | ||||
PthA2, PthA4, PthC1 | ||||
orange1.1g046669m.g | Tobacco Avr9/Cf9 elicited protein 146 (AE146) | Defense | [70] | |
PthA4, PthC1 | ||||
Xc + Ch x Ch (8.8) | orange1.1g026556m.g | Aspen LOB domain 1 (LOB1) | Cell growth | [71] |