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Table 1 Genes duplicated relative to A. burtoni with informative BLAST hits

From: Gene duplication in an African cichlid adaptive radiation

GenBank Homology A.twe M.est P.sim R.chi BitScore
CN4688282/2 Adenine nucleotide translocator s598 ns ns ns 0.60 567
0.0019
DY630000 Alcohol dehydrogenase Class VI ns ns 0.73 ns 379
0.0015
DY630424 Alkylated DNA repair protein alkB homolog 7 ns 0.43 ns ns 304
0.0002
DY629046 Arsenic (+3 oxidation state) methyltransferase ns ns ns 1.06 150
0.0031
DY626788 ATPase, H + transporting, lysosomal V0 subunit E ns 0.76 ns ns 87.8
0.0028
DY628437 Claudin 29a (cldn29a) gene ns 0.60 ns ns 526
0.005
DY632040 Coiled-coil domain containing protein 80 ns ns 1.19 2.13 434
3E-05 5E-07
DY629141 Crystallin gamma M2b ns ns ns 0.43 829
0.0024
DY6262041/2 C-type lectin domain family 4 member C ns 0.38 ns ns 246
0.0039
DY631088 Cystatin-B 0.45 ns ns ns 150
0.0016
DY630353 Cytosolic sulfotransferase 3 ns ns 0.62 0.64 713
0.0015 0.0013
CN470675 Dazl gene ns ns ns 0.57 89.7
0.0040
DY6299674/8 Ferritin heavy subunit ns ns ns 0.82 1160
8E-05
DY631817 Fish virus induced TRIM protein ns ns 0.590 ns 170
0.0005
DY626596 Fish virus induced TRIM protein ns ns 0.41 0.44 145
0.0045 0.0030
DY628624 Gamma M7 crystallin ns ns ns 0.42 169
0.0054
DY630388 Glutamyl-tRNA(Gln) amidotransferase 0.48 ns ns ns 347
0.0016
DY6261151/2 GTPase IMAP family member 7 ns ns 1.14 ns 370
0.0016
CN471284 High-mobility group 20B 0.60 ns ns ns 163
0.0004
CN469367 Hox gene cluster 1.34 1.16 0.86 1.11 183
3E-05 9E-05 0.0006 0.0002
DY627986 Hox gene cluster 1.81 1.12 0.80 1.22 95.1
3E-07 1E-05 0.0001 5E-06
DY629113 Immunoglobulin light chain ns ns 0.65 ns 482
0.0025
CN468953 Iron-sulfur cluster assembly enzyme ISCU ns ns ns 0.86 610
0.0022
DY628151 Kallikrein-8 precursor 1.02 ns ns ns 102
0.0015
DY627800 Kinesin-like protein 2 (knsl2) ns 0.86 1.84 1.14 398
0.0013 9E-06 0.0003
CN469578 KLR1 gene 1.04 ns ns ns 154
4E-05
DY629760 LOC100150543, polyprotein 1.35 ns 0.65 0.79 141
8E-06 0.001 0.0003
CN468718 LOC100151545, similar to Protein KIAA0284 0.72 0.0004 ns ns ns 145
DY629780 MHC class I ns 0.84 1.26 1.05 161
0.0053 0.0005 0.0016
DY630620 MHC class IA antigen ns ns 0.42 ns 120
0.0026
DY630701 MHC class II alpha subunit ns ns 0.49 ns 764
0.0053
DY631898 MHC class II antigen alpha chain ns ns 0.94 ns 87.8
0.0004
DY631847 Mitotic spindle assembly checkpoint protein MAD2A 0.60 ns ns ns 374
0.0008
DY627079 Muscle-type creatine kinase CKM2 ns 0.41 ns ns 787
0.0049
CN4693752/3 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ns 0.69 ns ns 663
0.0003
DY628779 Post-GPI attachment to proteins factor 2 ns 0.87 ns ns 123
0.0002
DY6261142/2 Ras association domain-containing protein 4 ns 0.82 ns ns 1086
0.0001
DY630104 Ras-related C3 botulinum toxin substrate 2 1.44 0.83 1.47 1.90 331
8E-06 0.0003 7E-06 1E-06
DY6305081/3 Replication factor C subunit 5 1.04 ns ns ns 1234
2E-05
DY628495 Ribosomal protein, large P2 (60S) ns ns ns 1.01 161
0.0001
DY6308322/3 Ribosomal protein S20 (40S) ns 0.65 ns ns 663
0.001
DY626643 Serine/threonine phosphatase gene ns 0.57 0.57 0.54 87.8
0.0004 0.0004 0.0063
CN470072 Sestrin 3 ns 1.30 1.61 1.70 116
0.0007 0.0002 0.0002
DY629126 Short coiled-coil protein ns ns ns 0.59 242
0.0025
DY630540 Small inducible cytokine SCYA102 ns 0.64 ns ns 1204
0.0019
CN471492 Solute carrier family 9 (sodium/hydrogen exchanger) ns ns 0.63 ns 197
0.0021
CN4711031/3 Ubiquitin ns ns 1.27 ns 985
0.0042
DY629776 UDP glycosyltransferase 2 family, polypeptide A1 ns 0.92 ns ns 304
0.0006
CN469822 Vacuolar ATP synthase subunit G 1 0.79 ns ns ns 277
0.0007
DY632057 Pituitary adenylate cyclase activating polypeptide receptor 1A ns 1.73 1.98 1.79 170
DY626009 Non-LTR retrotransposon Rex1a 0.70 ns ns ns 82.4
0.002
DY629391 Non-LTR retrotransposon Rex3_Tet 0.94 ns ns ns 122
0.0028
DY631649 SINE sequence ns 0.78 ns ns 138
0.0002
  1. Genomic Content Value: Log2 Hybridization coefficients for each species relative to A. burtoni as estimated by the linear model following background correction and normalization followed by the uncorrected p-value for those significantly different (P < FDR 0.1). BitScore: the quality of the alignment for the annotated homology. A.twe: A. tweddlei; M.est: M. estherae; P.sim: P. similis; R.chi: R. “chilingali”; “ns”: not significant; superscript numbers: when multiple array features represent a gene, these numbers indicate the number of significant array features and the total number of array features for that gene represented in the table by a single GenBank number and data row.