Gene duplication in an African cichlid adaptive radiation

Machado, Heather E; Jui, Ginger; Joyce, Domino A; Reilly, Christian RL; Lunt, David H; Renn, Suzy CP

doi:10.1186/1471-2164-15-161

BMC Genomics

Table 2 Genes duplicated relative to A. burtoni with no informative BLAST hit

From: Gene duplication in an African cichlid adaptive radiation

GenBank	A.twe	M.est	P.sim	R.chi
CN469125^2/2	1.32	ns	ns	ns
CN469125^2/2	2E-5	ns	ns	ns
CN469431	ns	ns	ns	0.50
CN469431	ns	ns	ns	0.0017
CN469460	ns	ns	0.64	ns
CN469460	ns	ns	0.0007	ns
CN469913	ns	ns	ns	0.63
CN469913	ns	ns	ns	0.0008
CN470216	ns	0.39	ns	ns
CN470216	ns	0.0039	ns	ns
CN470402	ns	ns	0.48	0.45
CN470402	ns	ns	0.0034	0.0051
CN470540	ns	ns	ns	0.60
CN470540	ns	ns	ns	0.0051
CN470597	0.65	ns	ns	ns
CN470597	0.0013	ns	ns	ns
CN470646	0.73	ns	ns	ns
CN470646	0.0003	ns	ns	ns
CN470701	ns	ns	ns	0.65
CN470701	ns	ns	ns	0.0052
CN470713	ns	ns	0.68	ns
CN470713	ns	ns	0.0009	ns
CN470724^1/2	1.02	ns	ns	ns
CN470724^1/2	0.0027	ns	ns	ns
CN470781	0.58	ns	ns	ns
CN470781	0.0025	ns	ns	ns
CN470835	ns	1.55	ns	ns
CN470835	ns	0.0002	ns	ns
CN470857	ns	0.67	ns	0.96
CN470857	ns	0.005	ns	0.0006
CN470988	ns	1.28	ns	1.34
CN470988	ns	0.0007	ns	0.0005
CN471261	ns	ns	0.93	ns
CN471261	ns	ns	0.001	ns
CN471811	ns	1.35	1.22	ns
CN471811	ns	6E-6	1E-5	ns
CN471851	ns	ns	0.47	ns
CN471851	ns	ns	0.0018	ns
CN472050	ns	ns	ns	0.70
CN472050	ns	ns	ns	0.0002
DY625804	ns	1.23	ns	ns
DY625804	ns	0.0001	ns	ns
DY625845^1/2	1.16	ns	ns	ns
DY625845^1/2	6E-6	ns	ns	ns
DY625884	0.49	ns	ns	ns
DY625884	0.0024	ns	ns	ns
DY625919	1.18	ns	ns	ns
DY625919	0.0001	ns	ns	ns
DY626122	1.50	ns	ns	ns
DY626122	2E-5	ns	ns	ns
DY626140	ns	1.05	ns	ns
DY626140	ns	0.0036	ns	ns
DY626192	ns	0.75	ns	ns
DY626192	ns	0.0002	ns	ns
DY626304	ns	ns	0.99	1.50
DY626304	ns	ns	4E-5	2.2E-6
DY626389	ns	ns	0.57	ns
DY626389	ns	ns	0.0022	ns
DY626428	ns	ns	ns	0.39
DY626428	ns	ns	ns	0.0053
DY626737	ns	ns	0.79	ns
DY626737	ns	ns	0.0001	ns
DY626766	ns	0.81	0.98	0.68
DY626766	ns	0.0003	0.0001	0.0009
DY627085	ns	0.44	ns	ns
DY627085	ns	0.0043	ns	ns
DY627087	1.15	ns	ns	ns
DY627087	3E-5	ns	ns	ns
DY627338	0.72	ns	ns	ns
DY627338	0.0006	ns	ns	ns
DY627361	ns	ns	ns	0.74
DY627361	ns	ns	ns	0.0001
DY627641	ns	0.76	0.85	ns
DY627641	ns	0.0012	0.0006	ns
DY627780	ns	1.51	ns	ns
DY627780	ns	3E-6	ns	ns
DY627911	1.04	0.87	0.49	ns
DY627911	5E-5	0.0002	0.0046	ns
DY628148	0.50	ns	ns	ns
DY628148	0.0012	ns	ns	ns
DY628172	1.38	ns	ns	ns
DY628172	4E-6	ns	ns	ns
DY628268	ns	ns	0.46	ns
DY628268	ns	ns	0.0017	ns
DY628316	ns	0.64	ns	ns
DY628316	ns	0.0026	ns	ns
DY628477	ns	ns	ns	0.58
DY628477	ns	ns	ns	0.0052
DY628517	0.76	ns	ns	ns
DY628517	0.0002	ns	ns	ns
DY628561	ns	ns	ns	0.42
DY628561	ns	ns	ns	0.0052
DY628642	ns	ns	1.62	1.13
DY628642	ns	ns	9E-5	0.0087
DY628702^1/2	ns	ns	ns	0.67
DY628702^1/2	ns	ns	ns	0.0004
DY628714	ns	ns	ns	0.48
DY628714	ns	ns	ns	0.0027
DY629058	ns	ns	ns	2.41
DY629058	ns	ns	ns	3.7E-5
DY629123	ns	0.87	0.83	1.41
DY629123	ns	0.0001	0.0001	3.8E-6
DY629387	ns	ns	1.18	ns
DY629387	ns	ns	4E-5	ns
DY629482	1.39	0.71	ns	1.12
DY629482	1E-5	0.0008	ns	4.3E-5
DY629717	ns	ns	1.60	1.28
DY629717	ns	ns	0.0002	0.0007
DY629882^1/2	ns	ns	ns	0.77
DY629882^1/2	ns	ns	ns	0.0032
DY629912	1.41	2.21	1.06	1.16
DY629912	8E-6	0.0003	7E-6	1.1E-6
DY630229	ns	0.88	0.83	ns
DY630229	ns	0.0015	0.0021	ns
DY630284	ns	0.54	ns	ns
DY630284	ns	0.0032	ns	ns
DY630373^1/2	ns	0.89	1.00	1.23
DY630373^1/2	ns	0.0001	6E-5	1.5E-5
DY630867	0.97	0.64	ns	ns
DY630867	0.0002	0.0024	ns	ns
DY630964	ns	ns	ns	0.95
DY630964	ns	ns	ns	0.0037
DY630993	ns	0.67	ns	ns
DY630993	ns	0.002	ns	ns
DY631067	ns	0.78	0.80	1.02
DY631067	ns	0.0008	0.0007	0.0002
DY631315	ns	ns	1.57	1.16
DY631315	ns	ns	0.003	0.0019
DY631408	ns	ns	0.50	ns
DY631408	ns	ns	0.0033	ns
DY631442	ns	1.40	1.16	ns
DY631442	ns	0.0014	0.004	ns
DY631505^1/2	ns	0.72	ns	ns
DY631505^1/2	ns	0.0029	ns	ns
DY631507	0.67	0.69	0.78	0.61
DY631507	0.0013	0.0011	0.0005	0.0022
DY631680	ns	ns	ns	1.02
DY631680	ns	ns	ns	0.0019
DY631698	ns	ns	1.03	ns
DY631698	ns	ns	0.0006	ns
DY631821	ns	ns	0.61	0.60
DY631821	ns	ns	0.0038	0.0039
DY631827	ns	0.86	ns	ns
DY631827	ns	0.0046	ns	ns
DY631850	0.85	ns	ns	ns
DY631850	0.0009	ns	ns	ns
DY631869	ns	0.39	ns	ns
DY631869	ns	0.0038	ns	ns
DY632007	0.99	ns	ns	ns
DY632007	0.0002	ns	ns	ns
DY632058^3/3	ns	0.90	0.72	0.71
DY632058^3/3	ns	0.0007	0.0026	0.0028
DY632092	ns	1.09	ns	ns
DY632092	ns	0.0007	ns	ns
DY632097	ns	0.79	ns	0.82
DY632097	ns	0.0031	ns	0.0002
DY632134^2/2	0.94	0.86	ns	0.84
DY632134^2/2	0.0002	0.0003	ns	0.0003
DY632256	ns	ns	1.56	ns
DY632256	ns	ns	0.0033	ns
DY632294	ns	0.41	ns	ns
DY632294	ns	0.0035	ns	ns

Genomic Content Value: Log2 Hybridization coefficients for each species relative to A. burtoni as estimated by the linear model following background correction and normalization followed by the uncorrected p-value for those significantly different. A.twe: A. tweddlei; M.est: M. estherae; P.sim: P. similis; R.chi: R. chilingali; “ns”: not significant; “*”: the GenBank number is a representative for multiple array features for that gene.

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ISSN: 1471-2164

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