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Table 1 Functional comparison of eRNA, miRspring, and miRDeep2

From: eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing

Functionality eRNA miRspring miRDeep2
Identification of known miRNAs + + +
Visualization of analytic results - + +
Discovery of miRNAs - - +
miRNA expression profiling analysis + - +
Batch data processing + - -
Visualization of sequencing quality control + - -
  1. +, available functions. -, unavailable functions.