Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

Table 3 Categorization and abundance of transcripts detected with RNA-seq

Summary	Lib 1	Lib 2	Lib 3	Lib 4	Lib 5	Lib 6	Lib 7
Total raw reads	8312677	7422797	7462817	7695810	8268795	7329570	7907043
Reads mapped to reference	5851955	5306235	5018702	5399517	6182990	5269488	5751263
Alignment	6467410	5758740	5324164	6623514	7615114	6899562	6842041
Unique mapped reads	5236500	4853730	4713240	4175521	4750866	3639414	4660485
Reads in gene region	4810502	4465738	4342745	3816552	4353451	3287048	4261630
Genes with ≥1 reads	21497	21537	21295	21160	21632	21336	22033
Gene # when RPKM is at least 1	14972	14452	14678	13924	14369	15037	14673

Lib 1-7: CK60, BTx623, San Chi San, China17, KS78, high- and low-NUE RIL bulk libraries respectively.

ISSN: 1471-2164