Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

Gelli, Malleswari; Duo, Yongchao; Konda, Anji Reddy; Zhang, Chi; Holding, David; Dweikat, Ismail

doi:10.1186/1471-2164-15-179

Table 6 List of DEG transcripts abundant in tolerant genotypes

From: Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

		Log(FC) = log₂(sensitive/tolerant genotype)
Gene annotation	Gene id	1/3	1/4	1/5	1/6	2/3	2/4	2/5	2/6	7/3	7/4	7/5	7/6
Ankyrin repeat	Sb07g002190	-7.5	-8.4	-7.7	-6.9	**	**	**	**	**	-3.0	-2.2	**
LHT1 lysine histidine transporter 1	Sb01g038720	-7.0	-7.7	**	-6.7	-7.0	-7.6	**	-6.7	**	**	**	**
SEC14 cytosolic factor	Sb05g026380	-7.8	-6.4	-7.7	**	-3.7	**	-3.6	**	**	**	**	**
Drought induced 19 protein	Sb04g013790	-3.8	-4.6	**	-3.2	-2.3	-3.1	**	-1.7	**	-2.3	**	**
Translation elf- Tu	Sb02g007166	-4.7	-4.6	**	-4.5	-4.1	-4.0	**	-3.9	-2.4	-2.3	**	**
BTB-POZ and MATH domain 1	Sb07g026735	-5.1	-5.6	**	**	-7.3	-7.8	**	-6.5	**	-2.3	**	**
Ribosomal protein (L16p/L10e)	Sb01g036330	-2.7	-3.4	-2.3	-2.0	**	-1.7	**	**	**	-1.4	**	**
Glutathione S-transferase	Sb09g003700	-2.1	-2.6	**	**	-2.4	-3.0	**	-1.3	-1.9	-2.5	**	**
Phosphatases	Sb08g019110	-2.1	-2.9	-2.1	-2.0	-2.9	-3.6	-2.9	-2.8	**	-1.6	**	**
Leucine-rich receptor-like kinase	Sb04g003840	-2.7	-2.6	-2.7	**	-1.9	-1.8	-1.9	**	**	**	-1.5	**
Phosphoglycerate mutase	Sb06g000380	-3.4	-3.3	**	-3.6	**	-1.5	**	-1.7	**	**	**	-1.3
RmlC-like cupins	Sb01g019830	-3.5	-5.0	-3.2	-3.2	**	-2.1	**	**	**	-2.0	**	**
Homeobox associated leucine zipper	Sb07g029150	-3.6	-2.7	**	**	-4.2	-3.4	-3.1	-2.8	**	**	**	**
Expressed protein	Sb08g019270	-3.7	-3.7	**	-3.0	-3.9	-4.0	**	-3.3	**	**	**	**
Transducin	Sb04g022100	-3.8	-3.6	**	-3.3	-3.2	-2.9	**	-2.6	**	**	**	**
Expressed protein	Sb04g000700	-3.9	-3.9	**	**	-6.9	-6.9	**	**	-3.5	-3.5	**	**
Trypsin family protein with PDZ domain	Sb08g015916	-4.3	**	**	-4.9	-4.2	**	**	-4.8	-3.1	**	**	-3.7
3-oxo-5-alpha-steroid 4-dehydrogenase	Sb02g003510	-4.9	-4.5	**	-3.2	-3.2	-2.8	**	-1.6	-2.8	-2.4	**	-1.1
F-box domain containing protein	Sb02g001640	-5.4	**	**	-4.4	-5.3	**	**	-4.3	-3.5	**	**	-2.4
DNA binding transposon protein	Sb05g020750	-7.0	-7.4	**	-7.4	-7.0	-7.3	**	-7.3	**	-2.6	**	**
Expressed protein	Sb04g000690	-7.7	-7.9	**	-7.0	-7.6	-7.9	**	-7.0	-5.5	-5.8	**	-4.9
Leucine Rich Repeat family protein	Sb06g001645	-7.9	-7.6	**	-7.2	-7.9	-7.5	**	-7.1	**	**	**	**
Expressed protein	Sb04g012640	-8.3	**	**	-8.2	-6.0	**	**	-5.9	-3.9	**	**	-3.7
Cell wall invertase 2	Sb0067s002240	-9.1	-7.4	**	-7.1	-6.7	-5.1	**	-4.8	-3.5	**	**	**
Hypothetical protein	Sb04g012541	-9.1	**	**	-9.3	-9.0	**	**	-9.3	-4.2	**	**	-4.5
Cupin domain containing protein	Sb07g005307	**	-2.9	**	**	-7.7	-9.2	-8.0	-7.9	**	-2.7	**	**
UDP-Glycosyltransferase	Sb04g027470	**	**	**	**	-6.2	-4.5	-5.2	-4.3	-2.3	**	-1.2	**

The transcriptional abundance of DEGs from 12 pair-wise comparisons (1/3, 1/4, 1/5, 1/6, 2/3, 2/4, 2/5, 2/6, 7/3, 7/4, 7/5, and 7/6) made between three sensitive genotypes [CK60 (1), BTx623 (2) and the low-NUE bulk (7)] with each of the four tolerant genotypes [San Chi San (3), China17 (4), KS78 (5) and the high-NUE bulk (6)] were summarized. **Not significant when FDR ≤ 0.001; Log(FC) is the log₂ ratio of gene transcript between sensitive and tolerant genotypes; If Log(FC) <0, negative values indicate transcript is abundant in tolerant genotypes.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com

BMC Genomics

Contact us