Table 1 Summary of intersections between endo-siRNAs and RNAPII occupied sequences (top) and AGO1 CLASH data (bottom)
From: Contribution of natural antisense transcription to an endogenous siRNA signature in human cells
Intersection RNAPII and short RNA reads | |||||
|---|---|---|---|---|---|
Integrated units | Total siRNA reads | Average | Reads with RNAPII occupancy | % | |
Total reads | 250197.3 | 4628 | 54.1 | 3236 | 69.9 |
5' | 146555.5 | 1131 | 129.6 | 1067 | 94.3 |
3' | 20395.1 | 1687 | 12.1 | 917 | 54.4 |
Internal exons | 20449.3 | 1003 | 20.4 | 652 | 65.0 |
1 exon genes | 25726.7 | 475 | 54.2 | 312* | 65.7 |
Others | 3106.0 | 332 | 9.4 | 122* | 36.7 |
Intersection AGO1 CLASH and short RNA reads | |||||
CLASH reads | Intersected siRNA reads | CLASH/siRNA reads | Total siRNA reads | % | |
Total reads | 22073 | 2572 | 8.6 | 4628 | 55.6 |
5' | 3143 | 686 | 4.6 | 1131 | 60.7 |
3' | 5621 | 1037 | 5.4 | 1687 | 61.5 |
Internal exons | 2707 | 562 | 4.8 | 1003 | 56.0 |
1 exon genes | 9070 | 117 | 77.5 | 133* | 88.0 |
Others | 1385 | 133 | 10.4 | 162* | 82.1 |