|
Name
|
Location
|
Fold change (case/control)
|
Corrected p value
|
Spliced?
|
Histone mark?
|
EST?
|
|---|
|
CUFF.11349
|
chr8:101524720-101588587
|
-1.88185
|
0.041685
|
Yes
|
Yes
|
Yes
|
|
CUFF.2472
|
chr12:31838565-31853772
|
-2.26342
|
0.123977
|
Yes
|
Yes
|
Yes
|
|
CUFF.3
|
chr1:80691-80824
|
-11.5273
|
4.46E-08
|
No
|
Yes
|
Yes
|
|
CUFF.4
|
chr1:452495-461228
|
-10.6557
|
7.54E-10
|
Yes
|
Yes
|
Yes
|
|
CUFF.5*
|
chr1:163653-164729
|
-12.5567
|
1.96E-10
|
No
|
No
|
Yes
|
|
CUFF.6*
|
chr1:164811-166159
|
-12.8975
|
1.27E-12
|
No
|
No
|
No
|
|
CUFF.7*
|
chr1:166235-166948
|
-12.7567
|
1.27E-12
|
Yes
|
No
|
Yes
|
|
CUFF.9
|
chr1:227665-257075
|
-11.1513
|
1.18E-08
|
Yes
|
Yes
|
Yes
|
- Column 5 denotes presence of spliced reads following GT-AG rule. Column 6 denotes presence of layered H3K4Me1 or H3K4Me3 histone modification marks at the locus. Column 7 denotes the presence of spliced or unspliced human ESTs in the UCSC Genome Browser database. *CUFF.5, CUFF.6 and CUFF.7 were annotated by the Cufflinks pipeline as separate transcripts but their close location suggests that they may be components of the same transcript.
