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Table 3 Identification of transcripts encoding putative transcription factors in cambium and differentiating xylem in C. japonica against Populus trichocarpa

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

TF family Description vs Populus
ESTs %*
C3H Zinc finger, C-x8-C-x5-C-x3-H type 160 5.82
NAC No apical meristem (NAM) domain 157 5.71
PHD Cys4--His--Cys3 zinc finger 146 5.31
AP2-EREB PAP2 domain 139 5.06
HB Homeobox domain 126 4.58
bHLH Helix-loop-helix DNA-binding domain 123 4.47
SNF2 ATP binding/DNA binding/helicase/nucleic acid binding 116 4.22
WRKY WRKY DNA-binding domain 115 4.18
C2H2 Zinc finger, C2H2 type 113 4.11
MYB Myb-like DNA-binding domain 110 4.00
Orphans antiporter/multidrug efflux pump/transporter 107 3.89
MYB-related N-terminal myb-domain 95 3.46
ARF Auxin response factor 68 2.47
SET SET domain 61 2.22
bZIP Basic leucine zipper (bZIP) motif 59 2.15
Trihelix Trihelix DNA-binding domain 58 2.11
CCAAT NUCLEAR FACTOR Y, SUBUNIT A10 54 1.96
G2-like PRENYLATED RAB ACCEPTOR 1.G2 54 1.96
GRAS GRAS protein 54 1.96
TRAF TRAF homology domain-containing protein 48 1.75
ABI3VP1 ABI3/VP1 protein 44 1.60
MADS DNA-binding and dimaerization domain 41 1.49
FAR1 N-terminal microtubule binding motor domain 40 1.46
GNAT GCN5-related N-acetyltransferase (GNAT) family protein 39 1.42
mTERF mitochondrial transcription termination factor family protein 36 1.31
Jumonji nucleic acid binding/zinc ion binding 31 1.13
TCP ATP binding/protein binding 30 1.09
HSF Heat shock factor 26 0.95
C2C2-Dof Dof zinc finger 23 0.84
FHA Forkhead domain 23 0.84
DBP protein phosphatase 2C 22 0.80
CPP copalyl pyrophosphate (CPP) of gibberellin biosynthesis 21 0.76
zf-HD zf-HD class homeobox domain 21 0.76
LOB LATERAL ORGAN BOUNDARIES 20 0.73
SBP SBP domain 20 0.73
AUX/IAA AUX/IAA family 19 0.69
C2C2-GATA GATA zinc finger 19 0.69
ARID AT-rich interaction domain 17 0.62
HMG HMG (high mobility group) domain 17 0.62
PLATZ Plant AT-rich sequnce and zinc-binding protein1 17 0.62
LUG LEUNIG gene 16 0.58
CAMTA Calmodulin-binding transcription activators 15 0.55
RWP-RK RWP-RK domain-containing protein 15 0.55
ARR-B Arabidopsis response regulator B 14 0.51
CSD superoxide dismutase 14 0.51
Tify JASMONATE-ZIM-DOMAIN PROTEIN 6 14 0.51
BES1 BRI1-EMS supressor 13 0.47
E2F-DP DNA binding/protein heterodimerization 13 0.47
SWI/SNF-SWI chromatin binding/protein binding 10 0.36
Alfin-like Cys4 zinc finger and His/Cys3 9 0.33
C2C2-YABBY YABBY transcription activator 9 0.33
GRF Growth regulation factor1 9 0.33
BSD BSD domain-containing protein 8 0.29
EIL Ethylene insensitivel (EIN3) 8 0.29
OFP predicted nuclear localization signal 8 0.29
Pseudo ARR-B Pseudo Arabidopsis response regulator B 8 0.29
TUB structural constituent of cytoskeleton 8 0.29
C2C2-CO-like CCT motif 7 0.25
DDT DDT domain-containing protein 7 0.25
Sigma70-like DNA binding/DNA-directed RNA polymerase 7 0.25
SWI/SNF-BAF SWIB complex BAF60b domain-containing protein 7 0.25
GeBPD NA-binding storekeeper protein-related 6 0.22
LIM LIM domain 5 0.18
TAZ TAZ zinc finger 5 0.18
VOZ VOZ domain 5 0.18
Coactivator p15 transcriptional coactivator p15 (PC4) family protein 3 0.11
IWS1 molecular_function unknown 3 0.11
BBR/BPC DNA binding 2 0.07
PBF-2-like peptidase/threonine-type endopeptidase 2 0.07
Rcd1-like RADICAL-INDUCED CELL DEATH1 2 0.07
SRS Domain unknown function 2 0.07
HRT nucleotide binding 1 0.04
MED6 RNA polymerase transcriptional regulation mediator-related 1 0.04
MED7 MED7 domain 1 0.04
RB Retinoblastoma-associated protein B domain 1 0.04
SOH1 SOH1 domain 1 0.04
ULT DNA binding 1 0.04
  1. *% is based on the 2749 Japanese cedar unique sequences with homologs in the PlnTFDB.