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Table 4 Identification of transcripts encoding putative transcription factors in cambium and differentiating xylem in C. japonica against Arabidopsis thaliana

From: Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

TF family Description vs Arabidopsis
ESTs %*
WRKY WRKY DNA-binding domain 218 7.07
MYB Myb-like DNA-binding domain 167 5.41
bHLH Helix-loop-helix DNA-binding domain 162 5.25
SNF2 ATP binding/DNA binding/helicase/nucleic acid binding 150 4.86
PHD Cys4--His--Cys3 zinc finger 148 4.80
Orphans antiporter/multidrug efflux pump/transporter 135 4.38
C3H Zinc finger, C-x8-C-x5-C-x3-H type 134 4.34
HB Homeobox domain 131 4.25
AP2-EREBP AP2 domain 130 4.21
C2H2 Zinc finger, C2H2 type 117 3.79
NAC No apical meristem (NAM) domain 104 3.37
MYB-related N-terminal myb-domain 83 2.69
SET SET domain 76 2.46
bZIP Basic leucine zipper (bZIP) motif 72 2.33
CCAAT NUCLEAR FACTOR Y, SUBUNIT A10 61 1.98
ARF Auxin response factor 56 1.82
G2-like PRENYLATED RAB ACCEPTOR 1.G2 51 1.65
HSF Heat shock factor 49 1.59
MADS DNA-binding and dimaerization domain 47 1.52
GRAS GRAS protein 45 1.46
C2C2-Dof Dof zinc finger 45 1.46
FHA Forkhead domain 45 1.46
ABI3VP1 ABI3/VP1 protein 43 1.39
Trihelix Trihelix DNA-binding domain 42 1.36
GNAT GCN5-related N-acetyltransferase (GNAT) family protein 39 1.26
Jumonji nucleic acid binding/zinc ion binding 39 1.26
mTERF mitochondrial transcription termination factor family protein 38 1.23
TRAF TRAF homology domain-containing protein 36 1.17
C2C2-GATA GATA zinc finger 32 1.04
LOB LATERAL ORGAN BOUNDARIES 31 1.00
AUX/IAA AUX/IAA family 25 0.81
DDT DDT domain-containing protein 25 0.81
FAR1 N-terminal microtubule binding motor domain 25 0.81
ARID AT-rich interaction domain 23 0.75
RWP-RK RWP-RK domain-containing protein 23 0.75
SBP SBP domain 23 0.75
CSD superoxide dismutase 21 0.68
ARR-B Arabidopsis response regulator B 20 0.65
DBP protein phosphatase 2C 19 0.62
TAZ TAZ zinc finger 18 0.58
zf-HD zf-HD class homeobox domain 18 0.58
BES1 BRI1-EMS supressor 16 0.52
E2F-DP DNA binding/protein heterodimerization 16 0.52
SWI/SNF-BAF60b SWIB complex BAF60b domain-containing protein 16 0.52
TUB structural constituent of cytoskeleton 16 0.52
C2C2-CO-like CCT motif 15 0.49
CPP copalyl pyrophosphate (CPP) of gibberellin biosynthesis 15 0.49
GRF Growth regulation factor1 15 0.49
SWI/SNF-SWI3 chromatin binding/protein binding 14 0.45
GeBP DNA-binding storekeeper protein-related 13 0.42
Pseudo ARR-B Pseudo Arabidopsis response regulator B 13 0.42
TCP ATP binding/protein binding 13 0.42
Tify JASMONATE-ZIM-DOMAIN PROTEIN 6 13 0.42
BSD BSD domain-containing protein 12 0.39
HMG HMG (high mobility group) domain 12 0.39
LUG LEUNIG gene 12 0.39
CAMTA Calmodulin-binding transcription activators 11 0.36
PLATZ Plant AT-rich sequnce and zinc-binding protein1 11 0.36
Alfin-like Cys4 zinc finger and His/Cys3 10 0.32
EIL Ethylene insensitivel (EIN3) 10 0.32
SRS Domain unknown function 9 0.29
IWS1 molecular_function unknown 7 0.23
OFP predicted nuclear localization signal 7 0.23
Sigma70-like DNA binding/DNA-directed RNA polymerase 6 0.19
BBR/BPC DNA binding 5 0.16
PBF-2-like peptidase/threonine-type endopeptidase 5 0.16
VOZ VOZ domain 4 0.13
LIM LIM domain 3 0.10
RB Retinoblastoma-associated protein B domain 3 0.10
Rcd1-like RADICAL-INDUCED CELL DEATH1 3 0.10
SAP STERILE APETALA domain 3 0.10
Coactivator p15 transcriptional coactivator p15 (PC4) family protein 2 0.06
C2C2-YABBY YABBY transcription activator 2 0.06
S1Fa-like DNA binding protein S1FA 2 0.06
HRT nucleotide binding 1 0.03
LFY Floricaula/Leafy protein 1 0.03
MBF1 Multiprotein bridging factor 1 1 0.03
MED6 RNA polymerase transcriptional regulation mediator-related 1 0.03
SOH1 SOH1 domain 1 0.03
  1. *% is based on the 3085 Japanese cedar unique sequences with homologs in the PlnTFDB.