From: How to get the most from microarray data: advice from reverse genomics
Dataset | Trait | Mean CG | Mean OG | Z | P value | Rank |
---|---|---|---|---|---|---|
BC_GSE10780 | -LOG(P) | 6.09 | 5.84 | 2.89 | 0.003852 | 6 |
m(AN) | 6.32 | 6.16 | 3.68 | 0.000233 | 4 | |
m(T) | 6.51 | 6.18 | 3.3 | 0.000967 | 5 | |
FC | 1.33 | 1.19 | 4.65 | 3.32E-06 | 3 | |
sd(AN) | 0.42 | 0.33 | 5.61 | 2.02E-08 | 1 | |
sd(T) | 0.62 | 0.45 | 5.37 | 7.87E-08 | 2 | |
BC_GSE3716 | -LOG(P) | 0.62 | 0.64 | 1.04 | 0.29834 | 3 |
m(AN) | 7.34 | 7.42 | 0.37 | 0.711382 | 6 | |
m(T) | 7.41 | 7.51 | 0.75 | 0.453255 | 4 | |
FC | 1.21 | 1.21 | 0.58 | 0.561915 | 5 | |
sd(AN) | 0.84 | 0.79 | 2.79 | 0.005271 | 2 | |
sd(T) | 0.89 | 0.81 | 3.55 | 0.000385 | 1 | |
CC_GSE31737 | -LOG(P) | 3.51 | 2.53 | 4.64 | 3.48E-06 | 6 |
m(AN) | 5.74 | 4.77 | 5.54 | 3.02E-08 | 5 | |
m(T) | 5.89 | 4.77 | 6.19 | 6.02E-10 | 4 | |
FC | 1.40 | 1.19 | 6.58 | 4.7E-11 | 2 | |
sd(AN) | 0.38 | 0.22 | 6.52 | 7.03E-11 | 3 | |
sd(T) | 0.56 | 0.24 | 7.53 | 5.07E-14 | 1 | |
LC_GSE19188 | -LOG(P) | 6.55 | 5.37 | 1.15 | 0.250144 | 6 |
m(AN) | 6.49 | 6.06 | 4.74 | 2.14E-06 | 4 | |
m(T) | 6.61 | 6.12 | 4,47 | 7.82E-06 | 5 | |
FC | 1.58 | 1.29 | 5.62 | 1.91E-08 | 3 | |
sd(AN) | 0.34 | 0.17 | 7.86 | 3.84E-15 | 2 | |
sd(T) | 0.93 | 0.56 | 10.77 | 4.77E-27 | 1 | |
LC_GSE18842 | -LOG(P) | 5.98 | 4.31 | 3.08 | 0.00207 | 6 |
m(AN) | 6.24 | 5.75 | 6.26 | 3.85E-10 | 4 | |
m(T) | 6.47 | 5.75 | 6.56 | 5.38E-11 | 3 | |
FC | 1.66 | 1.31 | 6.1 | 1.06E-09 | 5 | |
sd(AN) | 0.43 | 0.33 | 8.21 | 2.21E-16 | 2 | |
sd(T) | 0.75 | 0.47 | 8.72 | 2.78E-18 | 1 | |
PC_GSE6919 | -LOG(P) | 2.28 | 1.75 | 3.62 | 0.000295 | 4 |
m(AN) | 7.41 | 7.01 | 1.87 | 0.061484 | 5 | |
m(T) | 7.42 | 6.99 | 1.86 | 0.062886 | 6 | |
FC | 1.32 | 1.21 | 4,57 | 4.88E-06 | 2 | |
sd(AN) | 0.61 | 0.59 | 3.87 | 0.000109 | 3 | |
sd(T) | 0.74 | 0.64 | 4.71 | 2.48E-06 | 1 | |
PC_GSE21034 | -LOG(P) | 2.55 | 1.68 | 3.97 | 7.19E-05 | 6 |
m(AN) | 8.65 | 7.86 | 6.82 | 9.1E-12 | 4 | |
m(T) | 8.59 | 7.82 | 5.87 | 4.36E-09 | 5 | |
FC | 1.21 | 1.12 | 6.78 | 1.2E-11 | 3 | |
sd(AN) | 0.31 | 0.27 | 6.3 | 2.98E-10 | 3 | |
sd(T) | 0.37 | 0.28 | 6.83 | 8.49E-12 | 1 |